Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_05355 and RBAM_032330

See DNA alignment / Visit BSNT_05355 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:48
# Commandline: needle
#    -asequence pep-align/BSNT_05355___yvkC.1.9828.seq
#    -bsequence pep-align/RBAM_032330___yvkC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05355___yvkC-RBAM_032330___yvkC.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05355___yvkC-RBAM_032330___yvkC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05355___yvkC
# 2: RBAM_032330___yvkC
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 835
# Identity:     579/835 (69.3%)
# Similarity:   707/835 (84.7%)
# Gaps:           6/835 ( 0.7%)
# Score: 3061.0
# 
#
#=======================================

BSNT_05355___      1 MYSVLFRQAEESSQLAGAKGMNLIKLTKHGLPVPDGFIIQTNALARFMED     50
                     ||||.|::|||||:.|||||||||||||:|||||.|||||||||.|||||
RBAM_032330__      1 MYSVRFQKAEESSRSAGAKGMNLIKLTKNGLPVPGGFIIQTNALTRFMED     50

BSNT_05355___     51 NQLQETSENVESGIISGTFSDELKDELTSSFYKLRESYRSVAVRSSSASE    100
                     |.||...|.:|..|::||||.||::|||:|||:|||||.|||||||||||
RBAM_032330__     51 NGLQADQEQMERAIMNGTFSKELREELTASFYELRESYASVAVRSSSASE    100

BSNT_05355___    101 DLEGASFAGQYETYLNIKTEEEFLAKVKECWASFFSGRVSSYKKKMNNQI    150
                     ||||||||||||||||||||||||.|||||||||||.|||.||:||||..
RBAM_032330__    101 DLEGASFAGQYETYLNIKTEEEFLGKVKECWASFFSARVSGYKEKMNNDT    150

BSNT_05355___    151 AEPLMGIVVQGLIDSEMSGVIFSRNPVTHDDRELLISASYGLGEAVVSGS    200
                     ||||||:||||||:||:||||||||||||||.||:||||||||||:|||.
RBAM_032330__    151 AEPLMGVVVQGLINSEVSGVIFSRNPVTHDDGELMISASYGLGEAIVSGR    200

BSNT_05355___    201 VTPDTFIVNKSSFEIQKEIGAKEIYMESAAEGIAEKETSEDMRSRFCLTD    250
                     ||||||||||.:|:|:||||.||:|:.|..||:.||||:.|||:||||.|
RBAM_032330__    201 VTPDTFIVNKDTFQIEKEIGLKEMYIVSKDEGVTEKETTADMRNRFCLDD    250

BSNT_05355___    251 EQVIELAEITKKTEDLYGYPVDIEFGIADHQIYLLQARPITTIDQDKKAA    300
                     |.:.|||.:|.|||:|||||||:|||.|::::|||||||||||.||:|||
RBAM_032330__    251 ESIKELAMLTIKTEELYGYPVDLEFGFAENKLYLLQARPITTIAQDQKAA    300

BSNT_05355___    301 EEKRSFMITDTDMNDFWLNMESNIEGPVSPLFSSFIVPALEYGLKKSMQK    350
                     :|:|.|::|..|..:||||||:||||||||||:|.||||||||||:|.:.
RBAM_032330__    301 DEEREFIMTPRDQKEFWLNMEANIEGPVSPLFASLIVPALEYGLKESTKA    350

BSNT_05355___    351 FPI-GVVVDEVKLYRGHIYSK-NQGGQQPPSEDCGKELFPILSEHMYDII    398
                     ||: |:.::.|||::|.::|: ::...:.|:|.. :.|||:|::.|||||
RBAM_032330__    351 FPVMGIEIERVKLHQGRVFSRQHKTNDKLPAEQL-EALFPVLADRMYDII    399

BSNT_05355___    399 NHTYLPFYRTLDQLAQTEHTAESALDAFQKLKAFYLTAYEEHFNIVFPQI    448
                     ..|:||||:.||:||.|:||.|:|||||:.|:.|||..|.|||||||||:
RBAM_032330__    400 QETFLPFYQKLDELAHTDHTPETALDAFRNLQDFYLKGYAEHFNIVFPQV    449

BSNT_05355___    449 LLTNKLQAMYQDIQGESENAHFYEMLTGKMNKSLETDRCLWLFSMEVQEN    498
                     .|...|::||..::.|:.:. .||||.|.|||||||||.|||.|.:|:::
RBAM_032330__    450 ALNMILESMYGQVEKENTSL-LYEMLAGVMNKSLETDRQLWLLSGQVKDS    498

BSNT_05355___    499 PNLLTIFENNKPEQLQEKLEQTDEGRHFLKNVHEFLQEYGWRSVKSHDLI    548
                     |.|..:|..:..::|.:.|.|::||:.||:.|.|||||||||||||||||
RBAM_032330__    499 PELRRVFTVSHADELHQTLLQSNEGKRFLEQVGEFLQEYGWRSVKSHDLI    548

BSNT_05355___    549 EQIWVENPYFALANIQNYVRNGYHFDNEFQKTKEKREKLYNEFLENIEDP    598
                     |:.|.||||||||||||||||||.||:||.||.|||::||.:|::.|||.
RBAM_032330__    549 EETWAENPYFALANIQNYVRNGYDFDSEFHKTIEKRKQLYADFMDRIEDD    598

BSNT_05355___    599 GLRTEFDRYYQWTLNSANIKDDHHFYIDAMLDAKARIFLLKIGELLAENG    648
                     |.|..|||||||||:|:.||||||||||||||||||:.||||||||.:.|
RBAM_032330__    599 GFRETFDRYYQWTLSSSVIKDDHHFYIDAMLDAKARLCLLKIGELLQKLG    648

BSNT_05355___    649 VIQDREDLWFLYDDEVEQALLHPVSLQEKAEKRRQIFHEYELAQAPAYLG    698
                     ||.||||:|:||.||||:||:.||.:||||.:|:|:|.:|:|.:||||||
RBAM_032330__    649 VIDDREDMWYLYSDEVEKALVSPVPMQEKAAERKQLFQQYQLLEAPAYLG    698

BSNT_05355___    699 TPTKEQLKAAEEIVGAVIEDEKNTENHIFGIAASSGIATGPVKIIRDANE    748
                     |||.||||.||:|.|::.|||||||:.|:|:|||||||:||||:||||:|
RBAM_032330__    699 TPTSEQLKTAEQITGSITEDEKNTEHQIYGLAASSGIASGPVKVIRDASE    748

BSNT_05355___    749 FSQFAPGDVLVCKMTTPLWTSLFQDAKAIITDTGGILSHAAIIAREYGIP    798
                     ||:|:.||||||||||||||||||||||:|||||||||||||||||||:|
RBAM_032330__    749 FSRFSTGDVLVCKMTTPLWTSLFQDAKAVITDTGGILSHAAIIAREYGLP    798

BSNT_05355___    799 AVLGTRTATERLRDGDIITVDGSSGKITVVSRS--    831
                     ||||||.||:||.||||:||||::||||:|.|:  
RBAM_032330__    799 AVLGTRAATDRLNDGDIVTVDGTNGKITIVKRASC    833


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

Amino acid alignment: BSNT_05355 and RBAM_032330

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
