Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05355 and RBAM_032330
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:48
# Commandline: needle
# -asequence dna-align/BSNT_05355___yvkC.1.9828.seq
# -bsequence dna-align/RBAM_032330___yvkC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05355___yvkC-RBAM_032330___yvkC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05355___yvkC-RBAM_032330___yvkC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05355___yvkC
# 2: RBAM_032330___yvkC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2599
# Identity: 1788/2599 (68.8%)
# Similarity: 1788/2599 (68.8%)
# Gaps: 200/2599 ( 7.7%)
# Score: 5800.5
#
#
#=======================================
BSNT_05355___ 1 ATGTATTCTGTTTTATTTCGCCAGGCAGAAGAGTCCAGCCAGCT-GGCTG 49
||||||||.||...|||||...|.||.|||||.||.|||| ||| .||.|
RBAM_032330__ 1 ATGTATTCAGTGCGATTTCAAAAAGCGGAAGAATCGAGCC-GCTCTGCAG 49
BSNT_05355___ 50 GAGCAAAAGGAATGAATTTGATTAAATTGACCAAACACGGTCTTCCTGTT 99
||||||||||||||||..||||||||.||||.|||.||||.||.||.|||
RBAM_032330__ 50 GAGCAAAAGGAATGAACCTGATTAAACTGACGAAAAACGGGCTGCCCGTT 99
BSNT_05355___ 100 CCGGACGGGTTTATTATTCAAACGAATGCGCTCGCACGTTTTATGGAGGA 149
||.|.|||.||.||.|||||.||||||||.||..|||||||||||||.||
RBAM_032330__ 100 CCCGGCGGTTTCATCATTCAGACGAATGCCCTGACACGTTTTATGGAAGA 149
BSNT_05355___ 150 CAACCAGCTTCAAG-AGACTAGTGAAAACGTCGAAAGCGGGATCATTTCT 198
||||..|||||||| |||..|| |||.|..|.||..|||..||.||....
RBAM_032330__ 150 CAACGGGCTTCAAGCAGATCAG-GAACAGATGGAGCGCGCCATTATGAAC 198
BSNT_05355___ 199 GGAACATTTTCGGATGAGCTGAAAGATGAGCTGACTAGTTCCTTTTATAA 248
||.||.|||||..|.|||||....||.||.|||||....||.||||||.|
RBAM_032330__ 199 GGCACGTTTTCAAAAGAGCTTCGGGAGGAACTGACCGCCTCGTTTTATGA 248
BSNT_05355___ 249 GCTTAGAGAATCATATCG-ATCCGTAGCCGTGCGTTCTTCGTCTGCTTCG 297
..|.||||||||||| || .||.||.|||||.|||||.||.||.||.||.
RBAM_032330__ 249 ATTGAGAGAATCATA-CGCCTCTGTCGCCGTACGTTCCTCCTCCGCGTCC 297
BSNT_05355___ 298 GAAGATTTAGAAGGCGCCTCATTCGCGGGTCAATATGAAACCTACTTAAA 347
||||||.|.|||||.||.||.||||||||.||.||.||||||||.|||||
RBAM_032330__ 298 GAAGATCTTGAAGGGGCTTCTTTCGCGGGCCAGTACGAAACCTATTTAAA 347
BSNT_05355___ 348 TATCAAAACAGAGGAAGAGTTTCTGGCTAAAGTGAAAGAATGCTGGGCCT 397
||||||||||||.|||||||||||.|..||||||||||||||||||||.|
RBAM_032330__ 348 TATCAAAACAGAAGAAGAGTTTCTCGGAAAAGTGAAAGAATGCTGGGCTT 397
BSNT_05355___ 398 CATTTTTTTCTGGGCGGGTCAGCAGCTATAAGAAAAAAATGAACAATCAA 447
|.||.||.||.|.||||||||||.|||||||..|.||||||||||||.|.
RBAM_032330__ 398 CCTTCTTCTCGGCGCGGGTCAGCGGCTATAAAGAGAAAATGAACAATGAC 447
BSNT_05355___ 448 ATCGCAGAGCCGTTAATGGGAATAGTCGTTCAGGGGCTGATCGATTCAGA 497
|.||||||.|||||||||||..|.|||||.||.|||||||||.||||.||
RBAM_032330__ 448 ACCGCAGAACCGTTAATGGGCGTTGTCGTGCAAGGGCTGATCAATTCCGA 497
BSNT_05355___ 498 AATGTCAGGTGTTATCTTCAGCCGCAACCCTGTTACCCATGATGATAGAG 547
..|.|||||.||.||.||||||||.|||||.||.||.||||||||..|||
RBAM_032330__ 498 GGTTTCAGGAGTCATTTTCAGCCGAAACCCCGTCACACATGATGACGGAG 547
BSNT_05355___ 548 AGCTTTTAATCAGCGCCAGCTACGGGTTGGGTGAAGCTGTTGTTTCAGGA 597
||||..|.||||||||.||||||||..|.||.|||||..|.||.||.||.
RBAM_032330__ 548 AGCTGATGATCAGCGCGAGCTACGGTCTCGGAGAAGCAATCGTCTCCGGC 597
BSNT_05355___ 598 AGTGTTACCCCAGACACGTTCATTGTTAATAAATCTTCGTTTGAGATTCA 647
||.||.||.||.|||||.||.||.||.||||||..|.|.|||.|||||.|
RBAM_032330__ 598 AGAGTGACGCCTGACACATTTATCGTCAATAAAGATACATTTCAGATTGA 647
BSNT_05355___ 648 GAAAGAAATAGGTGCAAAGGAAATCTACATGGAGTCTGCGGCAGAAGGAA 697
.||||||||.||...|||.|||||.||.||.|..|||...|..|||||..
RBAM_032330__ 648 AAAAGAAATCGGCTTAAAAGAAATGTATATCGTTTCTAAAGACGAAGGCG 697
BSNT_05355___ 698 TTGCTGAAAAAGAAACGAGTGAAGACATGCGCAGCCGTTTTTGCCTTACA 747
|..|.||||||||.||||..|..||||||.|.|.|||.||.||||||
RBAM_032330__ 698 TGACGGAAAAAGAGACGACCGCTGACATGAGAAACCGCTTCTGCCTT--- 744
BSNT_05355___ 748 GATGAACAAGTGATTGAA-----TTG----GCTGAAATCACAAAAAAAAC 788
|||| ||.||.|..|.|| ||| |||| ||.|.|||.||
RBAM_032330__ 745 GATG-ACGAGAGCATCAAAGAGCTTGCCATGCTG-----ACGATAAAGAC 788
BSNT_05355___ 789 CGAAGACCTGTACGGATATCCTGTCGATATAGAATTTGGAATTGCTGATC 838
.|||||.||||||||.|||||.||.|||.|.|||||.|||.||||.||
RBAM_032330__ 789 GGAAGAACTGTACGGTTATCCCGTGGATCTCGAATTCGGATTTGCCGA-- 836
BSNT_05355___ 839 ATCAAATA-----TACCTTCTGCAAGCTCGCCCGATTACAACCATTGATC 883
||||| ||.||.||.||.||..|.|||||||||||.||.|..|
RBAM_032330__ 837 ---AAATAAGCTGTATCTGCTTCAGGCCAGGCCGATTACAACGATCGCGC 883
BSNT_05355___ 884 AGGA-CAAAAAGGCGGCAGAAGAAAAACGCAGCTTCATGATTACCGACAC 932
|||| ||.||| ||||||||.|||.||||....||.||.||.| ||.|.|
RBAM_032330__ 884 AGGATCAGAAA-GCGGCAGACGAAGAACGGGAATTTATCATGA-CGCCCC 931
BSNT_05355___ 933 -TGATATGAATGATTTCTGGCTTAACATGGAGTCTAATATTGAAGGTCCG 981
.|||..|||.||.||.|||||.||.||||||.|.|||||.||||||||.
RBAM_032330__ 932 GGGATCAGAAAGAGTTTTGGCTCAATATGGAGGCCAATATAGAAGGTCCC 981
BSNT_05355___ 982 GTGAGTCCGTTATTTTCATCCTTCATCGTGCCGGCATTGGAATATGGCTT 1031
||.||.||||||||..|.||..||||.||||||||.||||||||.|||.|
RBAM_032330__ 982 GTCAGCCCGTTATTCGCCTCACTCATTGTGCCGGCTTTGGAATACGGCCT 1031
BSNT_05355___ 1032 GAAGAAGAGCATGCAAAAG---TTTCCGATTGGTGTAGTTG---TTGATG 1075
.||..||||||.| ||| ||.|| ||||.|.| |.||
RBAM_032330__ 1032 CAAAGAGAGCACG---AAGGCATTCCC------TGTAATGGGCATCGA-- 1070
BSNT_05355___ 1076 AA--------GTAAAACTTTATCGCGGACATATTTATTCCA--------A 1109
|| ||.||||||.|||..||.|.|.|||.||||| |
RBAM_032330__ 1071 AATCGAGCGTGTCAAACTTCATCAGGGCCGTGTTTTTTCCAGACAGCATA 1120
BSNT_05355___ 1110 AAACCAAGGTGGACAGCAGCCTCCTTCTGAAGACTGCGGCAAAGAGCTTT 1159
|.||.|| .|||| |||..||..|.|||.|.|..| |||.|||||
RBAM_032330__ 1121 AGACGAA---CGACA--AGCTGCCCGCAGAACAGTTAG---AAGCGCTTT 1162
BSNT_05355___ 1160 TCCCGATTTTATCGGAGCATATGTATGACATCATCAATCACACATACCTC 1209
||||..|.||..|.||.|..|||||.||.||.||..|..|.||.|..||.
RBAM_032330__ 1163 TCCCCGTCTTGGCTGACCGCATGTACGATATTATTCAGGAAACCTTTCTG 1212
BSNT_05355___ 1210 CCTTTTTACCGGACACTGGACCAGCTCGCACAAACTGAGCATACCGCAGA 1259
||||||||.|..|..||||||.|.||.||.||.||.||.|||||..|.||
RBAM_032330__ 1213 CCTTTTTATCAAAAGCTGGACGAACTGGCGCATACAGACCATACGCCGGA 1262
BSNT_05355___ 1260 AAGCGCACTGGATGCTTTTCAAAAACTAAAGGCCTTTTATCTCACGGCTT 1309
.|..||.||.|||||.||.|.|||.||..|.|.|||.|||.|.|..|..|
RBAM_032330__ 1263 GACTGCCCTTGATGCGTTCCGAAACCTGCAAGACTTCTATTTAAAAGGAT 1312
BSNT_05355___ 1310 ATGAAGAGCACTTCAATATCGTTTTCCCGCAAAT--CCTTTTAACAAAC- 1356
|.|.|||.||.||||||||.||.||.|||||..| |.|| ||||
RBAM_032330__ 1313 ACGCAGAACATTTCAATATTGTCTTTCCGCAGGTTGCGTT-----AAACA 1357
BSNT_05355___ 1357 --AAACTGCAAGCGATGTATCAGGACA--TTCAAGGAGAGTCCGAAAAC- 1401
|.||||.||.|.||||| .||||| || |||...||||||
RBAM_032330__ 1358 TGATACTGGAATCCATGTA--CGGACAGGTT------GAGAAAGAAAACA 1399
BSNT_05355___ 1402 --GCTCATTTTTATGAGATGCTGACAGGAAAAATGAACAAATCACTGGAA 1449
.|.|.|.|.||.||.||||||.|.||....|||||.||.|||.||||.
RBAM_032330__ 1400 CATCCCTTCTGTACGAAATGCTGGCTGGCGTCATGAATAAGTCATTGGAG 1449
BSNT_05355___ 1450 ACGGACCG-TTGCTTATGGCTATTTTCTATGG--AAGTTCAGGAGAACCC 1496
||.|||.| ..|| |.|||||..|||| .|| ||||..|.||.|.|||
RBAM_032330__ 1450 ACCGACAGACAGC-TCTGGCTTCTTTC--CGGACAAGTAAAAGACAGCCC 1496
BSNT_05355___ 1497 GAACCTTC---------TGACCATTTTTGAAAACAACAAGCCTGAACAGC 1537
..|.||.| |.||..|||.| ||.||| ||..|||
RBAM_032330__ 1497 TGAGCTGCGGCGCGTCTTTACGGTTTCT--------CATGCC-GATGAGC 1537
BSNT_05355___ 1538 TCCAGGAGAAATTAGA-------ACAAACAGATGAGGGGAGACAC-TTCC 1579
|.| ||.||| .|||.||.|||||||.|..|.| |||.
RBAM_032330__ 1538 TGC-------ATCAGACGCTTCTGCAATCAAATGAGGGAAAGCGCTTTCT 1580
BSNT_05355___ 1580 TGAAGAACGTCCATGAATTCTTGCAAGAATACGGATGGAGATCTGTTAAA 1629
||||.|| |||..||||||.||.||.||||||||.||||||||.||.|||
RBAM_032330__ 1581 TGAACAA-GTCGGTGAATTTTTACAGGAATACGGCTGGAGATCCGTGAAA 1629
BSNT_05355___ 1630 AGTCATGATCTGATTGAACAAATCTGGGTGGAAAATCCGTATTTCGCTCT 1679
|||||||||||.||||||.|||..||||.||||||.||.|||||||||.|
RBAM_032330__ 1630 AGTCATGATCTCATTGAAGAAACTTGGGCGGAAAACCCTTATTTCGCTTT 1679
BSNT_05355___ 1680 GGCTAATATTCAAAATTATGTCCGTAATGGCTATCATTTTGACAATGAAT 1729
|||.||.|||||.||.||||||||.||.||.||..|||||||||.|||.|
RBAM_032330__ 1680 GGCCAACATTCAGAACTATGTCCGGAACGGATACGATTTTGACAGTGAGT 1729
BSNT_05355___ 1730 TTCAGAAAACGAAAGAAAAACGAGAGAAATTATACAATGAATTCTTGGAA 1779
||||.|||||||.||||||||||.|..|..|.|||...||.||..||||.
RBAM_032330__ 1730 TTCATAAAACGATAGAAAAACGAAAACAGCTCTACGCCGACTTTATGGAT 1779
BSNT_05355___ 1780 AACATAGAAGATCCCGGTTTGCGCACCGAA----TTTGACCGCTATTATC 1825
|..||.||||||..|||.||.|| |.| ||||||||||||||||
RBAM_032330__ 1780 AGAATTGAAGATGACGGCTTCCG----GGAGACGTTTGACCGCTATTATC 1825
BSNT_05355___ 1826 AATGGACACTGAACTCTGCAAAT-----ATAAAAGATGATCACCACTTTT 1870
|.||||||.|| |||.| || ||.||||||||||||||.||||
RBAM_032330__ 1826 AGTGGACATTG---TCTTC--ATCCGTCATCAAAGATGATCACCATTTTT 1870
BSNT_05355___ 1871 ATATTGACGCCATGCTGGATGCCAAGGCGAGAATCTTT--CTGCTGAAGA 1918
|||||||.||.||||||||.|||||.|||.| .|||| ||.|||||.|
RBAM_032330__ 1871 ATATTGATGCGATGCTGGACGCCAAAGCGCG--CCTTTGCCTTCTGAAAA 1918
BSNT_05355___ 1919 TAGGTGAATTGCTGGCGGAAAAC--GGTGTCATTCAAGATCGTGAGGACC 1966
|.||.||..|||| ...||||| ||.||.||..|.|||||.|||||..
RBAM_032330__ 1919 TCGGCGAGCTGCT--TCAAAAACTTGGCGTAATCGATGATCGGGAGGATA 1966
BSNT_05355___ 1967 TTTGGTTTTTATATGACGACGAAGTGGAACAAGCGCTTCT-TCACCCTGT 2015
|.||||..|||||...|||.|||||.||..|||||||..| ||.|| |.
RBAM_032330__ 1967 TGTGGTACTTATACAGCGATGAAGTCGAGAAAGCGCTCGTGTCGCC--GG 2014
BSNT_05355___ 2016 ATCC-CTGCAAGAAAAGGCTGAAAAACGCAGACAGATTTTTCATGAGTAT 2064
.||| .||||.|||||.||.|...||||.|.||||.|.||.||..|.|||
RBAM_032330__ 2015 TTCCGATGCAGGAAAAAGCCGCTGAACGAAAACAGCTCTTCCAGCAATAT 2064
BSNT_05355___ 2065 GA---GCTGGCCCAAGCCCCTGCCTACCTCGGCACCCCGACAAAAGAACA 2111
.| |||.| |||||||.||.||.|||||.||.|||||....|||||
RBAM_032330__ 2065 CAATTGCTTG---AAGCCCCCGCTTATCTCGGGACTCCGACTTCGGAACA 2111
BSNT_05355___ 2112 GCTCAAAGCAGCTGAAGAAATTGTCGGCGCTGTGATAGAGGATGAAAAAA 2161
|||.|||.|.||||||.|.|||..||||.|..|.|.|||.||||||||||
RBAM_032330__ 2112 GCTGAAAACGGCTGAACAGATTACCGGCTCCATCACAGAAGATGAAAAAA 2161
BSNT_05355___ 2162 ACACAGAGAATCATATTTTTGGCATTGCGGCATCAAGCGGCATTGCGACA 2211
||||.||..||||.||||..||..|||||||.||||||||.||.||.|..
RBAM_032330__ 2162 ACACTGAACATCAAATTTACGGACTTGCGGCGTCAAGCGGAATCGCAAGC 2211
BSNT_05355___ 2212 GGTCCGGTGAAAATCATTCGGGACGCCAATGAATTTTC-------TCAAT 2254
||.|||||||||.|||||||.|||||.|.||||||||| ||||
RBAM_032330__ 2212 GGCCCGGTGAAAGTCATTCGTGACGCAAGTGAATTTTCCCGTTTTTCAA- 2260
BSNT_05355___ 2255 TCGCGCCTGGGGACGTACTCGTTTGCAAGATGACCACACCGCTATGGACC 2304
|.||.|||||.||.||.|||||.|||||.||||||||.||||||
RBAM_032330__ 2261 ------CAGGAGACGTGCTTGTCTGCAAAATGACGACACCGCTGTGGACC 2304
BSNT_05355___ 2305 AGCCTGTTTCAAGACGCCAAAGCGATAATTACAGACACAGGCGGCATTTT 2354
||.|||||.||.||.||.||.||..|.|||||.|||||.||||||||..|
RBAM_032330__ 2305 AGTCTGTTCCAGGATGCAAAGGCCGTCATTACGGACACGGGCGGCATCCT 2354
BSNT_05355___ 2355 GTCTCACGCTGCGATTATTGCCCGTGAATACGGCATTCCAGCCGTTCTCG 2404
|||.||.||.|||||.||.||..|.||||||||..||||.||||||||||
RBAM_032330__ 2355 GTCACATGCGGCGATCATCGCGAGGGAATACGGGCTTCCGGCCGTTCTCG 2404
BSNT_05355___ 2405 GCACACGCACGGCAACCGAAAGACTGCGA-GACGGTGACATCATCACTGT 2453
|||||||..|.||.||.||.||.|| |.| |||||.||.|||.||||.||
RBAM_032330__ 2405 GCACACGTGCCGCGACTGACAGGCT-CAACGACGGAGATATCGTCACGGT 2453
BSNT_05355___ 2454 TGACGGTAGCAGCGGCAAAATCACAGTTGTCAGCCGGTCCTGA------ 2496
.|||||.|..|.||||||.||.||..||||||..||..|.|.|
RBAM_032330__ 2454 GGACGGGACAAACGGCAAGATTACGATTGTCAAACGCGCTTCATGCTAG 2502
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