Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_05281 and RBAM_031920
See
DNA alignment /
Visit
BSNT_05281 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:43
# Commandline: needle
# -asequence pep-align/BSNT_05281___yvdA.1.9828.seq
# -bsequence pep-align/RBAM_031920___yvdA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_05281___yvdA-RBAM_031920___yvdA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05281___yvdA-RBAM_031920___yvdA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05281___yvdA
# 2: RBAM_031920___yvdA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 195
# Identity: 155/195 (79.5%)
# Similarity: 177/195 (90.8%)
# Gaps: 3/195 ( 1.5%)
# Score: 821.5
#
#
#=======================================
BSNT_05281___ 1 MVSLTSILEHNQRFVSEKKYEPYKTTKFPSKKLVIVTCMDTRLTELLPQA 50
||||:|||||||:||.|:|||||:|||||.||||||:|||||||||||||
RBAM_031920__ 1 MVSLSSILEHNQQFVQERKYEPYQTTKFPKKKLVIVSCMDTRLTELLPQA 50
BSNT_05281___ 51 MGLKNGDAKIVKNAGAIVSHPFGSVMRSILVAIYELQAEAVCIVGHHECG 100
|||:||||||:|||||||||||||||||||||:||||||.|||:||.|||
RBAM_031920__ 51 MGLRNGDAKIIKNAGAIVSHPFGSVMRSILVAVYELQAEEVCIIGHRECG 100
BSNT_05281___ 101 MSGLNASSILEKAKERGVEDSCLNLLTSAGLDLKTWLTGFHSVEESVSHS 150
||||||:|||.|||||||||.||:||..||:||:|||||||||||||:||
RBAM_031920__ 101 MSGLNAASILNKAKERGVEDKCLSLLQHAGVDLETWLTGFHSVEESVAHS 150
BSNT_05281___ 151 VNMIKNHPLLPKKVPVHGLVIHPETGKLDVVINGYETELINNHS- 194
|||:::|||||::||||||||.|.||.||||::|||| :....
RBAM_031920__ 151 VNMVRHHPLLPEEVPVHGLVIDPGTGTLDVVVDGYET--VKGGCS 193
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.