Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05281 and RBAM_031920

See Amino acid alignment / Visit BSNT_05281 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:43
# Commandline: needle
#    -asequence dna-align/BSNT_05281___yvdA.1.9828.seq
#    -bsequence dna-align/RBAM_031920___yvdA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05281___yvdA-RBAM_031920___yvdA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05281___yvdA-RBAM_031920___yvdA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05281___yvdA
# 2: RBAM_031920___yvdA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 602
# Identity:     442/602 (73.4%)
# Similarity:   442/602 (73.4%)
# Gaps:          37/602 ( 6.1%)
# Score: 1660.5
# 
#
#=======================================

BSNT_05281___      1 ATGGTTTCTTTAACATCAATTTTGGAACACAATCAGCGGTTTGTCAGTGA     50
                     ||||||||||||.||...||||||||.|||||.||||.|||||||...||
RBAM_031920__      1 ATGGTTTCTTTATCAAGCATTTTGGAGCACAACCAGCAGTTTGTCCAAGA     50

BSNT_05281___     51 GAAGAAGTATGAACCGTACAAAACGACAAAGTTTCCTTCGAAAAAGCTCG    100
                     .|.|||.||||||||.|||.||||||||||.||.||....||||||||.|
RBAM_031920__     51 AAGGAAATATGAACCTTACCAAACGACAAAATTCCCGAAAAAAAAGCTTG    100

BSNT_05281___    101 TCATTGTCACCTGTATGGATACAAGGCTTACAGAACTTCTTCCGCAAGCA    150
                     ||||.||..|||||||||||||||||||.||.||.|||||.|||||.||.
RBAM_031920__    101 TCATCGTATCCTGTATGGATACAAGGCTGACGGAGCTTCTGCCGCAGGCG    150

BSNT_05281___    151 ATGGGGCTTAAAAACGGTGATGCTAAAATTGTAAAAAACGCGGGAGCCAT    200
                     |||||.||.|.||||||.|||||.|||||..|||||||||||||||||||
RBAM_031920__    151 ATGGGACTCAGAAACGGCGATGCCAAAATCATAAAAAACGCGGGAGCCAT    200

BSNT_05281___    201 CGTTTCTCACCCATTTGGAAGCGTGATGCGAAGCATACTGGTCGCGATTT    250
                     .||||||||||||||||||||.||.|||||.|||||..||||.||..|||
RBAM_031920__    201 TGTTTCTCACCCATTTGGAAGTGTCATGCGGAGCATTTTGGTTGCCGTTT    250

BSNT_05281___    251 ATGAATTGCAGGCTGAAGCGGTATGCATTGTCGGCCATCATGAATGCGGA    300
                     |||||.|||||||.||.|..||.|||||..|.||.||.|..||.||||||
RBAM_031920__    251 ATGAACTGCAGGCAGAGGAAGTCTGCATCATAGGTCACCGCGAGTGCGGA    300

BSNT_05281___    301 ATGTCTGGGCTGAATGCGTCCTCGATTCTTGAGAAAGCAAAGGAACGCGG    350
                     |||||.||..|.||||||.|.||.||..|..|.||||||||.||.|||||
RBAM_031920__    301 ATGTCGGGATTAAATGCGGCTTCCATATTAAATAAAGCAAAAGAGCGCGG    350

BSNT_05281___    351 GGTGGAGGATAGCTGCCTGAATTTGCTGACGAGC--GCCGGACTCGATTT    398
                     .||.|||||.|..||.||.|...|.|||  .|||  ||.|||.|||||||
RBAM_031920__    351 CGTTGAGGACAAATGTCTCAGCCTTCTG--CAGCATGCGGGAGTCGATTT    398

BSNT_05281___    399 GAAAACGTGGCTGACTGGTTTTCACAGCGTAGAAGAAAGCGTTTCCCACA    448
                     |.||||.||||||||.||||||||||||||.|||||||||||..||||||
RBAM_031920__    399 GGAAACATGGCTGACCGGTTTTCACAGCGTCGAAGAAAGCGTGGCCCACA    448

BSNT_05281___    449 GTGTGAACATGATTAAGAATCATCCGCTGCTT-CCGAAAAAAGTGCCGGT    497
                     |.|||||.|||.|.|.|.|||||||||| ||| ||..||.|.||||||||
RBAM_031920__    449 GCGTGAATATGGTCAGGCATCATCCGCT-CTTGCCTGAAGAGGTGCCGGT    497

BSNT_05281___    498 TCACGGACTTGTCATTCATCCTGAAACAGGAAAACTTGATGTGGTCATTA    547
                     .|||||.||.||.|||.||||.|..||.||.|..||.|||||.|||.||.
RBAM_031920__    498 GCACGGGCTGGTGATTGATCCGGGGACGGGGACGCTGGATGTTGTCGTTG    547

BSNT_05281___    548 ACGGTTATGAAACTG--------------AGCTTATAAACAATCACTCAT    583
                     |||||||||||||.|              ||||.|               
RBAM_031920__    548 ACGGTTATGAAACAGTCAAAGGAGGATGCAGCTGA---------------    582

BSNT_05281___    584 AA    585
                       
RBAM_031920__    582 --    582


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