Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00322 and RBAM_031420

See DNA alignment / Visit BSNT_00322 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:06
# Commandline: needle
#    -asequence pep-align/BSNT_00322___ybbH.1.9828.seq
#    -bsequence pep-align/RBAM_031420.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00322___ybbH-RBAM_031420.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00322___ybbH-RBAM_031420.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00322___ybbH
# 2: RBAM_031420
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 295
# Identity:      87/295 (29.5%)
# Similarity:   150/295 (50.8%)
# Gaps:          14/295 ( 4.7%)
# Score: 391.0
# 
#
#=======================================

BSNT_00322___      1 ---MATGGLAIIQSMKHKLPPSERKLADYILAHPHKAIESTVNEISALAN     47
                        :.:..:..||:....|.|..|.:||:|:..|...|..::.:::....
RBAM_031420        1 MTPVNSSSIGKIQAASKGLSPKLRAIADHIVKEPKDVIHLSIIQLAEKTK     50

BSNT_00322___     48 SSDAAVIRLCKSLGLKGFQDLKMRVAGDLA-KPTFQGYRDIVPHEPLPSI     96
                     ||:|.:.||||.||..|:||||:.:|.::. :|....:.::.|.:.:..|
RBAM_031420       51 SSEATIFRLCKRLGFSGYQDLKIALAQEIVQEPVQHIHEEMSPDDDIEVI    100

BSNT_00322___     97 SEKTAGNAIQAIQDTSDLMDYKELERAVSLLLKAHTVHFIGLGASGIVAK    146
                     ..|.....|..:.||..|:|..::|:||.::.:|..:.|.|.|.||::|.
RBAM_031420      101 IRKVFRTNISGLTDTFHLIDPADVEKAVEMIHRADRIEFYGNGGSGLIAT    150

BSNT_00322___    147 DAQQKWLRIHKQATAFTDTHLVASLIANADKDDIVFAISFSGETQEIIEL    196
                     ||..|::|......|.||:|..|........|..|..||.||..:::::.
RBAM_031420      151 DAYHKFMRTGINCIAHTDSHFQAMSAGLLGPDSAVIGISHSGSNKDVLDA    200

BSNT_00322___    197 FAMAKEKGITTISLTQFSQTSVSALADVPLYTAHSNEALIRSAATSSRLA    246
                     ...||..|..||.:|.:.::.::.::||.|||: :.|...|:.|.|:|||
RBAM_031420      201 VKTAKSLGAGTIGITSYQKSPLTQISDVVLYTS-TRETAFRTEAMSARLA    249

BSNT_00322___    247 QLFIIDVLFLGMAAEQYETTTGYIDKTRAAIQYENKIRHLEGEGF    291
                     ||.:||.|:...|..:.|.|...:.:.|..|.::..         
RBAM_031420      250 QLSVIDTLYFATARLRQEKTLANLQQIRKMIAHKRL---------    285


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