Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00322 and RBAM_031420

See Amino acid alignment / Visit BSNT_00322 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:06
# Commandline: needle
#    -asequence dna-align/BSNT_00322___ybbH.1.9828.seq
#    -bsequence dna-align/RBAM_031420.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00322___ybbH-RBAM_031420.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00322___ybbH-RBAM_031420.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00322___ybbH
# 2: RBAM_031420
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1062
# Identity:     500/1062 (47.1%)
# Similarity:   500/1062 (47.1%)
# Gaps:         390/1062 (36.7%)
# Score: 974.5
# 
#
#=======================================

BSNT_00322___      1 ---------------------------------AT------GGCCACAGG     11
                                                      ||      |||||   |
RBAM_031420        1 ATGACCCCTGTGAATTCAAGCAGCATCGGGAAGATTCAGGCGGCCA---G     47

BSNT_00322___     12 C---GGTTTAGCGATCATCCAATCAA-TGAAGCATAAGCTCCCTCCATCC     57
                     |   |||||..||     ||||  || |||                    
RBAM_031420       48 CAAAGGTTTGTCG-----CCAA--AATTGA--------------------     70

BSNT_00322___     58 GAGCGCAAACTTGCAGATTATATCCTAGCCCATCCCCACAAAGCAATCGA    107
                     |||||    .|||||||..|||||.|             .|||.||.|||
RBAM_031420       71 GAGCG----ATTGCAGACCATATCGT-------------GAAGGAACCGA    103

BSNT_00322___    108 AAGCACGGTCAACG-AAATCAGCGCCTTAGCCA--ATTC-----------    143
                     |||        ||| .|.|||   |||| .|||  ||||           
RBAM_031420      104 AAG--------ACGTGATTCA---CCTT-TCCATCATTCAGCTGGCGGAA    141

BSNT_00322___    144 --------AAG---TGACGCTGCCG-TCATCAGGCTCTGCAAATCACTCG    181
                             |||   |||.|| |.|| |..|||||||.||||||...||||
RBAM_031420      142 AAAACAAAAAGCTCTGAAGC-GACGATTTTCAGGCTGTGCAAACGGCTCG    190

BSNT_00322___    182 GTTTAAAAGGATTTCAAGATTTAAAAATGAGAGTAGCGGGCGATCTGGCA    231
                     ||||....||.|.|||.|||||||||||            ||..||.|| 
RBAM_031420      191 GTTTTTCCGGCTATCAGGATTTAAAAAT------------CGCGCTTGC-    227

BSNT_00322___    232 AAGCCTACGTTTCAGGGCTACCGGGATATTGTTCCCCACGAGCCGCTGC-    280
                                |||         |||.||.|||   ||.||||||.||| 
RBAM_031420      228 -----------TCA---------GGAGATCGTT---CAGGAGCCGGTGCA    254

BSNT_00322___    281 ---CCTCCATTTCCGAAAAAACG---GCCGGCAATGCCATTCAAGCCAT-    323
                        |.|.|||    |||.|||.|   .|||.|.|.|..||..|||.||| 
RBAM_031420      255 GCACATTCAT----GAAGAAATGAGCCCCGACGACGATATCGAAGTCATC    300

BSNT_00322___    324 -TCAGGATACTT-------CAGAC---------CTGATGGACTAC-----    351
                      ||.|||.|.||       ||.||         ||||..|| |||     
RBAM_031420      301 ATCCGGAAAGTTTTCCGCACAAACATTTCCGGTCTGACCGA-TACCTTTC    349

BSNT_00322___    352 -----AAAGAGC---------TTGAACGAGCGGTTTCTCTGCTTCTCAAA    387
                          |.|||.|         |||||..||||||             |.|
RBAM_031420      350 ATTTAATAGATCCGGCCGACGTTGAAAAAGCGGT-------------AGA    386

BSNT_00322___    388 GCTCAT--ACCGTGC------------ATTTTATCGGCCTCGGGGCTTCC    423
                     ..|.||  ||||.||            |||||| |||...|||.|.||||
RBAM_031420      387 AATGATCCACCGCGCGGACAGAATCGAATTTTA-CGGAAACGGCGGTTCC    435

BSNT_00322___    424 GGCATTGTCGCCAAGGACGCCCAGCA-AAAGTGGCTTCGCATTC----AT    468
                     ||..|..||||||..|||||..|.|| |||.|   |..||.|.|    ||
RBAM_031420      436 GGGCTGATCGCCACAGACGCGTATCATAAATT---TATGCGTACGGGTAT    482

BSNT_00322___    469 AAACAAGCAACCGCGTTTACAGACACTCATCTT-------GTGGCA----    507
                     ||| ..|| |.||||...||.||..|||| |||       .||.||    
RBAM_031420      483 AAA-TTGC-ATCGCGCACACGGATTCTCA-CTTTCAGGCGATGTCAGCGG    529

BSNT_00322___    508 -TCTTTAATCGCAAATGCAGATAAAGACGACATCGTATTCGCCATTTCGT    556
                      ||||  .|||   .|.|.||||..|..|.||      |||.||||||..
RBAM_031420      530 GTCTT--CTCG---GTCCCGATAGCGCAGTCA------TCGGCATTTCTC    568

BSNT_00322___    557 TTTCAGGAGAGACACAGGAAATCATTGAACTGTTTGCCATGGCCAAGGAA    606
                     .|||.|||       ||.||  ||..||..||.|.|.|..||    .|||
RBAM_031420      569 ATTCGGGA-------AGCAA--CAAGGACGTGCTCGACGCGG----TGAA    605

BSNT_00322___    607 AAAGGC---ATCAC----------AACGATCAGCCTCACACAATTCAGTC    643
                     ||.|||   |||||          .||||||.||.|.|||          
RBAM_031420      606 AACGGCCAAATCACTCGGCGCCGGCACGATCGGCATTACA----------    645

BSNT_00322___    644 AGACATCC----GTCTCCGCACTGGCTGATGTCC--CTT-----TGTATA    682
                     || |..||    |||.||||.|...|.|||.|||  |.|     ||||||
RBAM_031420      646 AG-CTACCAAAAGTCGCCGCTCACCCAGATTTCCGACGTGGTGCTGTATA    694

BSNT_00322___    683 CAGCCCATTCCAATGAAGCCTTGATTC-GAAGTGCAGCCACTTCCTCCCG    731
                     | |.|.|   |||.|.||.|....||| |||..|.|||.|..|||.|..|
RBAM_031420      695 C-GTCAA---CAAGGGAGACGGCTTTCAGAACGGAAGCAATGTCCGCAAG    740

BSNT_00322___    732 CCTCGCCCAGCTTTTTATAATTGATGTTTTGTTTTTAGGCATGG--CGGC    779
                     .||.||||||||||...|.||||||....|||.|||.|.||.||  ||||
RBAM_031420      741 GCTTGCCCAGCTTTCGGTCATTGATACACTGTATTTCGCCACGGCCCGGC    790

BSNT_00322___    780 TG-AGCAGTATGAAA-----CGACAACCGGTT-----ATAT-AGATAAAA    817
                     || .||||.| ||||     ||.||||   ||     |.|| ||| ||||
RBAM_031420      791 TGCGGCAGGA-GAAAACGCTCGCCAAC---TTGCAGCAAATCAGA-AAAA    835

BSNT_00322___    818 CGAGAGCAGCCATACAA---TATGAGAATAAAATAAGGCATCTTGAAGGG    864
                     .||..|| ||   ||||   |.||    |||                   
RBAM_031420      836 TGATCGC-GC---ACAAACGTTTG----TAA-------------------    858

BSNT_00322___    865 GAGGGGTTTTAA    876
                                 
RBAM_031420      858 ------------    858


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