Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00322 and RBAM_031420
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:06
# Commandline: needle
# -asequence dna-align/BSNT_00322___ybbH.1.9828.seq
# -bsequence dna-align/RBAM_031420.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00322___ybbH-RBAM_031420.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00322___ybbH-RBAM_031420.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00322___ybbH
# 2: RBAM_031420
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1062
# Identity: 500/1062 (47.1%)
# Similarity: 500/1062 (47.1%)
# Gaps: 390/1062 (36.7%)
# Score: 974.5
#
#
#=======================================
BSNT_00322___ 1 ---------------------------------AT------GGCCACAGG 11
|| ||||| |
RBAM_031420 1 ATGACCCCTGTGAATTCAAGCAGCATCGGGAAGATTCAGGCGGCCA---G 47
BSNT_00322___ 12 C---GGTTTAGCGATCATCCAATCAA-TGAAGCATAAGCTCCCTCCATCC 57
| |||||..|| |||| || |||
RBAM_031420 48 CAAAGGTTTGTCG-----CCAA--AATTGA-------------------- 70
BSNT_00322___ 58 GAGCGCAAACTTGCAGATTATATCCTAGCCCATCCCCACAAAGCAATCGA 107
||||| .|||||||..|||||.| .|||.||.|||
RBAM_031420 71 GAGCG----ATTGCAGACCATATCGT-------------GAAGGAACCGA 103
BSNT_00322___ 108 AAGCACGGTCAACG-AAATCAGCGCCTTAGCCA--ATTC----------- 143
||| ||| .|.||| |||| .||| ||||
RBAM_031420 104 AAG--------ACGTGATTCA---CCTT-TCCATCATTCAGCTGGCGGAA 141
BSNT_00322___ 144 --------AAG---TGACGCTGCCG-TCATCAGGCTCTGCAAATCACTCG 181
||| |||.|| |.|| |..|||||||.||||||...||||
RBAM_031420 142 AAAACAAAAAGCTCTGAAGC-GACGATTTTCAGGCTGTGCAAACGGCTCG 190
BSNT_00322___ 182 GTTTAAAAGGATTTCAAGATTTAAAAATGAGAGTAGCGGGCGATCTGGCA 231
||||....||.|.|||.||||||||||| ||..||.||
RBAM_031420 191 GTTTTTCCGGCTATCAGGATTTAAAAAT------------CGCGCTTGC- 227
BSNT_00322___ 232 AAGCCTACGTTTCAGGGCTACCGGGATATTGTTCCCCACGAGCCGCTGC- 280
||| |||.||.||| ||.||||||.|||
RBAM_031420 228 -----------TCA---------GGAGATCGTT---CAGGAGCCGGTGCA 254
BSNT_00322___ 281 ---CCTCCATTTCCGAAAAAACG---GCCGGCAATGCCATTCAAGCCAT- 323
|.|.||| |||.|||.| .|||.|.|.|..||..|||.|||
RBAM_031420 255 GCACATTCAT----GAAGAAATGAGCCCCGACGACGATATCGAAGTCATC 300
BSNT_00322___ 324 -TCAGGATACTT-------CAGAC---------CTGATGGACTAC----- 351
||.|||.|.|| ||.|| ||||..|| |||
RBAM_031420 301 ATCCGGAAAGTTTTCCGCACAAACATTTCCGGTCTGACCGA-TACCTTTC 349
BSNT_00322___ 352 -----AAAGAGC---------TTGAACGAGCGGTTTCTCTGCTTCTCAAA 387
|.|||.| |||||..|||||| |.|
RBAM_031420 350 ATTTAATAGATCCGGCCGACGTTGAAAAAGCGGT-------------AGA 386
BSNT_00322___ 388 GCTCAT--ACCGTGC------------ATTTTATCGGCCTCGGGGCTTCC 423
..|.|| ||||.|| |||||| |||...|||.|.||||
RBAM_031420 387 AATGATCCACCGCGCGGACAGAATCGAATTTTA-CGGAAACGGCGGTTCC 435
BSNT_00322___ 424 GGCATTGTCGCCAAGGACGCCCAGCA-AAAGTGGCTTCGCATTC----AT 468
||..|..||||||..|||||..|.|| |||.| |..||.|.| ||
RBAM_031420 436 GGGCTGATCGCCACAGACGCGTATCATAAATT---TATGCGTACGGGTAT 482
BSNT_00322___ 469 AAACAAGCAACCGCGTTTACAGACACTCATCTT-------GTGGCA---- 507
||| ..|| |.||||...||.||..|||| ||| .||.||
RBAM_031420 483 AAA-TTGC-ATCGCGCACACGGATTCTCA-CTTTCAGGCGATGTCAGCGG 529
BSNT_00322___ 508 -TCTTTAATCGCAAATGCAGATAAAGACGACATCGTATTCGCCATTTCGT 556
|||| .||| .|.|.||||..|..|.|| |||.||||||..
RBAM_031420 530 GTCTT--CTCG---GTCCCGATAGCGCAGTCA------TCGGCATTTCTC 568
BSNT_00322___ 557 TTTCAGGAGAGACACAGGAAATCATTGAACTGTTTGCCATGGCCAAGGAA 606
.|||.||| ||.|| ||..||..||.|.|.|..|| .|||
RBAM_031420 569 ATTCGGGA-------AGCAA--CAAGGACGTGCTCGACGCGG----TGAA 605
BSNT_00322___ 607 AAAGGC---ATCAC----------AACGATCAGCCTCACACAATTCAGTC 643
||.||| ||||| .||||||.||.|.|||
RBAM_031420 606 AACGGCCAAATCACTCGGCGCCGGCACGATCGGCATTACA---------- 645
BSNT_00322___ 644 AGACATCC----GTCTCCGCACTGGCTGATGTCC--CTT-----TGTATA 682
|| |..|| |||.||||.|...|.|||.||| |.| ||||||
RBAM_031420 646 AG-CTACCAAAAGTCGCCGCTCACCCAGATTTCCGACGTGGTGCTGTATA 694
BSNT_00322___ 683 CAGCCCATTCCAATGAAGCCTTGATTC-GAAGTGCAGCCACTTCCTCCCG 731
| |.|.| |||.|.||.|....||| |||..|.|||.|..|||.|..|
RBAM_031420 695 C-GTCAA---CAAGGGAGACGGCTTTCAGAACGGAAGCAATGTCCGCAAG 740
BSNT_00322___ 732 CCTCGCCCAGCTTTTTATAATTGATGTTTTGTTTTTAGGCATGG--CGGC 779
.||.||||||||||...|.||||||....|||.|||.|.||.|| ||||
RBAM_031420 741 GCTTGCCCAGCTTTCGGTCATTGATACACTGTATTTCGCCACGGCCCGGC 790
BSNT_00322___ 780 TG-AGCAGTATGAAA-----CGACAACCGGTT-----ATAT-AGATAAAA 817
|| .||||.| |||| ||.|||| || |.|| ||| ||||
RBAM_031420 791 TGCGGCAGGA-GAAAACGCTCGCCAAC---TTGCAGCAAATCAGA-AAAA 835
BSNT_00322___ 818 CGAGAGCAGCCATACAA---TATGAGAATAAAATAAGGCATCTTGAAGGG 864
.||..|| || |||| |.|| |||
RBAM_031420 836 TGATCGC-GC---ACAAACGTTTG----TAA------------------- 858
BSNT_00322___ 865 GAGGGGTTTTAA 876
RBAM_031420 858 ------------ 858
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