Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_05135 and RBAM_031310
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:37
# Commandline: needle
# -asequence pep-align/BSNT_05135___cggR.1.9828.seq
# -bsequence pep-align/RBAM_031310___cggR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_05135___cggR-RBAM_031310___cggR.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05135___cggR-RBAM_031310___cggR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05135___cggR
# 2: RBAM_031310___cggR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 344
# Identity: 296/344 (86.0%)
# Similarity: 309/344 (89.8%)
# Gaps: 29/344 ( 8.4%)
# Score: 1500.0
#
#
#=======================================
BSNT_05135___ 1 -------------------------MQYIRLTEPIGRRSLSASLGISERV 25
:||||||||||||||:||||::|||
RBAM_031310__ 1 MNQLIQAQKKLLPDLLLVMQKRFEILQYIRLTEPIGRRSLAASLGLTERV 50
BSNT_05135___ 26 LRGEVQFLKEQNLVDIKTNGMTLTEEGYELLSVLEDTMKDVLGLTLLEKT 75
||.||||||||||:||||||||:|||||.|||:|||||||||||||||||
RBAM_031310__ 51 LRSEVQFLKEQNLIDIKTNGMTMTEEGYSLLSILEDTMKDVLGLTLLEKT 100
BSNT_05135___ 76 LKERLNLKDAIIVSGDSDQSPWVKKEMGRAAVACMKKRFSGKNIVAVTGG 125
||||||||||||||||||||||||||:|||||||||||||||||||||||
RBAM_031310__ 101 LKERLNLKDAIIVSGDSDQSPWVKKELGRAAVACMKKRFSGKNIVAVTGG 150
BSNT_05135___ 126 TTIEAVAEMMTPDSKNRELLFVPARGGLGEDVKNQANTICAHMAEKASGT 175
|||||||:||||||||||||||||||||||||||||||||||||||||||
RBAM_031310__ 151 TTIEAVADMMTPDSKNRELLFVPARGGLGEDVKNQANTICAHMAEKASGT 200
BSNT_05135___ 176 YRLLFVPGQLSQGAYSSIIEEPSVKEVLNTIKSASMLVHGIGEAKTMAQR 225
||||||||||||||||||||||||||||:|||||||||||||||:|||:|
RBAM_031310__ 201 YRLLFVPGQLSQGAYSSIIEEPSVKEVLHTIKSASMLVHGIGEARTMAER 250
BSNT_05135___ 226 RNTTLEDLKKIDDNDAVTEAFGYYFNADGEVVHKVHSVGMQLDDIDAIPD 275
|||.||||||||||.|||||||||||||||||||||||||||||:|||||
RBAM_031310__ 251 RNTPLEDLKKIDDNHAVTEAFGYYFNADGEVVHKVHSVGMQLDDLDAIPD 300
BSNT_05135___ 276 IIAVAGGSSKAEAIEAYFKKPRNTVLVTDEGAAKKLLRDE---- 315
||||||||||||||||||||.||||||||||||||||||.
RBAM_031310__ 301 IIAVAGGSSKAEAIEAYFKKQRNTVLVTDEGAAKKLLRDNSPSI 344
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