Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05135 and RBAM_031310
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:37
# Commandline: needle
# -asequence dna-align/BSNT_05135___cggR.1.9828.seq
# -bsequence dna-align/RBAM_031310___cggR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05135___cggR-RBAM_031310___cggR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05135___cggR-RBAM_031310___cggR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05135___cggR
# 2: RBAM_031310___cggR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1035
# Identity: 839/1035 (81.1%)
# Similarity: 839/1035 (81.1%)
# Gaps: 87/1035 ( 8.4%)
# Score: 3743.5
#
#
#=======================================
BSNT_05135___ 0 -------------------------------------------------- 0
RBAM_031310__ 1 ATGAACCAGTTAATACAAGCTCAAAAAAAATTATTGCCTGATCTTTTGCT 50
BSNT_05135___ 1 -------------------------TTGCAGTATATCAGGCTGACAGAAC 25
|||||||||||||||||.||.||||
RBAM_031310__ 51 TGTGATGCAGAAAAGATTTGAAATCTTGCAGTATATCAGGCTTACCGAAC 100
BSNT_05135___ 26 CCATCGGGCGAAGAAGCCTGTCTGCCAGTCTCGGAATCAGCGAGCGTGTG 75
|.|||||.||.|||||.||..|.||||||||||||.|.|.||||||.||.
RBAM_031310__ 101 CGATCGGCCGCAGAAGTCTTGCAGCCAGTCTCGGATTGACCGAGCGCGTT 150
BSNT_05135___ 76 CTGAGGGGCGAGGTTCAGTTTTTAAAGGAACAGAACCTGGTCGATATTAA 125
||.||..||||||||||||||||.||.||||||||.||..||||||||||
RBAM_031310__ 151 CTCAGAAGCGAGGTTCAGTTTTTGAAAGAACAGAATCTCATCGATATTAA 200
BSNT_05135___ 126 GACAAACGGCATGACATTGACAGAAGAGGGCTATGAACTGCTTTCTGTTT 175
.|||||||||||||||.||||.||||||||||||..|||||||||..||.
RBAM_031310__ 201 AACAAACGGCATGACAATGACGGAAGAGGGCTATTCACTGCTTTCGATTC 250
BSNT_05135___ 176 TGGAAGATACGATGAAAGATGTTTTAGGTTTGACTCTTTTGGAAAAGACA 225
||||||||||||||||.|||||||||||.|||||.|||||||||||||||
RBAM_031310__ 251 TGGAAGATACGATGAAGGATGTTTTAGGGTTGACGCTTTTGGAAAAGACA 300
BSNT_05135___ 226 TTAAAAGAACGTTTAAATCTGAAGGATGCCATTATCGTATCCGGAGACAG 275
||||||||.||..|.||||||||.||.|||||||||||.|||||.|||||
RBAM_031310__ 301 TTAAAAGAGCGGCTTAATCTGAAAGACGCCATTATCGTTTCCGGTGACAG 350
BSNT_05135___ 276 CGATCAATCCCCATGGGTCAAAAAAGAAATGGGAAGAGCGGCTGTCGCAT 325
|||.|||||.||.|||||||||||||||.|.||.||||||||.||.||||
RBAM_031310__ 351 CGACCAATCTCCTTGGGTCAAAAAAGAATTAGGGAGAGCGGCCGTTGCAT 400
BSNT_05135___ 326 GTATGAAAAAAAGATTTTCAGGCAAAAATATCGTCGCTGTAACTGGCGGT 375
||||||||||.||||||||||||||||||||||||||||||||.||||||
RBAM_031310__ 401 GTATGAAAAAGAGATTTTCAGGCAAAAATATCGTCGCTGTAACCGGCGGT 450
BSNT_05135___ 376 ACGACAATTGAAGCTGTCGCCGAAATGATGACGCCGGATTCTAAAAACCG 425
||||||||||||||.||||||||.|||||||||||||||||.||||||||
RBAM_031310__ 451 ACGACAATTGAAGCCGTCGCCGATATGATGACGCCGGATTCAAAAAACCG 500
BSNT_05135___ 426 CGAGCTTTTGTTTGTGCCTGCAAGAGGCGGTTTAGGCGAAGACGTGAAAA 475
||||||..||||||||||.|||||||||||||||||||||||.|||||||
RBAM_031310__ 501 CGAGCTCCTGTTTGTGCCCGCAAGAGGCGGTTTAGGCGAAGATGTGAAAA 550
BSNT_05135___ 476 ACCAGGCGAACACCATATGCGCGCATATGGCGGAGAAGGCTTCAGGCACT 525
||||||||||||||||||||||||||||||||||.|||||||||||||||
RBAM_031310__ 551 ACCAGGCGAACACCATATGCGCGCATATGGCGGAAAAGGCTTCAGGCACT 600
BSNT_05135___ 526 TACCGGCTTTTGTTTGTTCCGGGACAGCTGTCACAAGGCGCCTATTCATC 575
||.|||||||||||.|||||.|||||||||||||||||||||||.|||||
RBAM_031310__ 601 TATCGGCTTTTGTTCGTTCCCGGACAGCTGTCACAAGGCGCCTACTCATC 650
BSNT_05135___ 576 TATTATTGAAGAGCCTTCTGTCAAAGAGGTGCTGAACACCATTAAATCAG 625
||||||||||||.|||||.||.|||||||||||..||||.||||||||||
RBAM_031310__ 651 TATTATTGAAGAACCTTCCGTAAAAGAGGTGCTTCACACGATTAAATCAG 700
BSNT_05135___ 626 CGAGTATGCTGGTTCACGGAATCGGCGAAGCTAAAACTATGGCTCAGCGC 675
||||||||||.||||||||||||||||||||||.|||.|||||..||||.
RBAM_031310__ 701 CGAGTATGCTCGTTCACGGAATCGGCGAAGCTAGAACAATGGCGGAGCGA 750
BSNT_05135___ 676 AGAAACACGACTTTAGAAGACTTAAAGAAAATAGATGATAACGACGCGGT 725
|||||||||.||||.|||||.||.||||||||||||||.||..|.|||||
RBAM_031310__ 751 AGAAACACGCCTTTGGAAGATTTGAAGAAAATAGATGACAATCATGCGGT 800
BSNT_05135___ 726 GACAGAAGCGTTCGGCTACTATTTTAACGCGGACGGCGAAGTGGTTCACA 775
||||||.||.|||||||||||.|||||.||||||||.|||||.|||||||
RBAM_031310__ 801 GACAGAGGCATTCGGCTACTACTTTAATGCGGACGGAGAAGTCGTTCACA 850
BSNT_05135___ 776 AAGTGCATTCTGTCGGAATGCAGCTGGATGACATAGACGCCATCCCCGAT 825
|.||||||||.||||||||||||||.||||||.|.||.|||||.|||||.
RBAM_031310__ 851 AGGTGCATTCAGTCGGAATGCAGCTTGATGACCTCGATGCCATTCCCGAC 900
BSNT_05135___ 826 ATTATTGCGGTAGCGGGCGGATCATCAAAAGCCGAGGCGATCGAGGCTTA 875
|||||.||||||||||||||||||||||||||.||.||.||.||.|||||
RBAM_031310__ 901 ATTATCGCGGTAGCGGGCGGATCATCAAAAGCAGAAGCAATAGAAGCTTA 950
BSNT_05135___ 876 CTTTAAAAAGCCACGCAACACGGTTCTCGTCACAGACGAAGGAGCCGCAA 925
.||||||||||..||.|||||||||||||||||.||||||||||||||||
RBAM_031310__ 951 TTTTAAAAAGCAGCGAAACACGGTTCTCGTCACGGACGAAGGAGCCGCAA 1000
BSNT_05135___ 926 AGAAGTTATTAAGGGATGA------------ATAA 948
|||||||||||||||||.| ||||
RBAM_031310__ 1001 AGAAGTTATTAAGGGATAACAGTCCCTCAATATAA 1035
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