Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_05124 and RBAM_031140

See DNA alignment / Visit BSNT_05124 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:36
# Commandline: needle
#    -asequence pep-align/BSNT_05124___yvbJ.1.9828.seq
#    -bsequence pep-align/RBAM_031140___yvbJ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05124___yvbJ-RBAM_031140___yvbJ.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05124___yvbJ-RBAM_031140___yvbJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05124___yvbJ
# 2: RBAM_031140___yvbJ
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 605
# Identity:     373/605 (61.7%)
# Similarity:   467/605 (77.2%)
# Gaps:          10/605 ( 1.7%)
# Score: 1990.0
# 
#
#=======================================

BSNT_05124___      1 -MFCKECGQKNNEGAKFCKQCGTPVGGGSKQANQETASTAETRQAPRKPI     49
                      .|||.|||:|||.|.|||:||.|:|.||:...|.....||.....||||
RBAM_031140__      1 MFFCKHCGQQNNEEAHFCKECGKPIGKGSRLERQAAVKAAEPASQMRKPI     50

BSNT_05124___     50 PKKTIILWSSIAAACVILFAAYKTGAYFTSKDRLVDKFEQAVNDEDQDQI     99
                     ||||:.:|..||||.::|.|||||||:.||:.||.|:|||||:|.|..::
RBAM_031140__     51 PKKTLFMWGGIAAALILLIAAYKTGAWLTSEKRLTDQFEQAVHDGDTKRL    100

BSNT_05124___    100 ATLLTPVNDKLKLTKNNVKPFLTYLKDHPDKKDELFASLRDETAQKDIVY    149
                     |.||||.:.||||.:.||||.|.|.|.|    |||.||||..:::.|.||
RBAM_031140__    101 AALLTPSDKKLKLNETNVKPLLAYAKKH----DELLASLRGNSSETDAVY    146

BSNT_05124___    150 AEKDGKSLLVFDHYDLKVAPVYFEVSSNYKNTDLYVNKEEAGSVKKADQA    199
                     .:|:||:||:||||:|||.||||.::||||..|||:|.|:.|:|||||:.
RBAM_031140__    147 VKKEGKTLLLFDHYELKVDPVYFRITSNYKGADLYINSEKTGTVKKADET    196

BSNT_05124___    200 QTLGPYIPGEYTVSAKLTNDVVDLVKKEDIQAVGDSSFRVDLSLEADDVT    249
                     |..|||.||.||..|||.|:.||:|||::.:|.|..:...||.|:|:|||
RBAM_031140__    197 QIFGPYAPGVYTAEAKLKNETVDVVKKQEAEAAGSRNVEFDLPLDAEDVT    246

BSNT_05124___    250 FSLADDIKSGKGDLLINGKSIHKDPFKSVTYGPLLTDGSMTASVEAEFPW    299
                     |:.||..||.||||||||||:|||||.|||||||||||||||:|||:|||
RBAM_031140__    247 FTPADSFKSAKGDLLINGKSVHKDPFTSVTYGPLLTDGSMTAAVEADFPW    296

BSNT_05124___    300 GKTKTAGVPIDDNEMKLTLIPDQDTQEQIMNTIVKTTKQYSKALSDGNIA    349
                     ||.|||.|||:..::.||||||||||:.||:|||||||||:||::|||..
RBAM_031140__    297 GKMKTADVPINSTDVDLTLIPDQDTQQTIMDTIVKTTKQYTKAMADGNTD    346

BSNT_05124___    350 QMTEASANWKAETKDTVDSMKSADSYLKDRYLETDFDLDTFALSQKNDGT    399
                     |||||.:.||.:||:.|..|||:.::|||:|.||.||||:||:||:| |.
RBAM_031140__    347 QMTEAGSAWKEQTKEVVSGMKSSGTFLKDQYKETSFDLDSFAISQEN-GR    395

BSNT_05124___    400 WQVSVTGKELHQSSTYNDYTKSEMTDDSPSYEYLLSYDKKQKKWIFEDAE    449
                     |||:|.|||||:|:.::..||.:|.:..||:.|:||||.|.|||:||.|:
RBAM_031140__    396 WQVTVMGKELHESAYFDGNTKPDMEEAEPSFHYVLSYDTKHKKWVFEKAD    445

BSNT_05124___    450 STFESAGTNIKKIKNDKPETYTSAWAGSKNKGSESSASGNVTDEQVTLFM    499
                     ...:|:|||:||||||:|:|||||||.||.    ::|||:||:||||.||
RBAM_031140__    446 PASDSSGTNVKKIKNDQPKTYTSAWASSKG----NTASGSVTNEQVTSFM    491

BSNT_05124___    500 GSYLQSQADAVNQNNFSLMEDSLEKGSSLYSDQQHLVAKLNKEGTTEDFN    549
                     ..||.:|:.||:.|||::||.:||:||.||:|||.||.||:.|||||.||
RBAM_031140__    492 TDYLTNQSSAVSLNNFAIMEGNLEEGSPLYADQQKLVKKLHSEGTTEVFN    541

BSNT_05124___    550 NYEVKSWSQNGSAVTIKTYEEFEITKSGGSPKLRTYNWTYTGVVKNGRIY    599
                     ...|||:||.||.:||.|||||.|||:|||||||||||||.|:||:||||
RBAM_031140__    542 EVNVKSFSQKGSHLTIHTYEEFYITKAGGSPKLRTYNWTYGGIVKDGRIY    591

BSNT_05124___    600 LTSIQ    604
                     |||||
RBAM_031140__    592 LTSIQ    596


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.