Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05124 and RBAM_031140
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:36
# Commandline: needle
# -asequence dna-align/BSNT_05124___yvbJ.1.9828.seq
# -bsequence dna-align/RBAM_031140___yvbJ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05124___yvbJ-RBAM_031140___yvbJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05124___yvbJ-RBAM_031140___yvbJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05124___yvbJ
# 2: RBAM_031140___yvbJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1927
# Identity: 1266/1927 (65.7%)
# Similarity: 1266/1927 (65.7%)
# Gaps: 248/1927 (12.9%)
# Score: 3794.0
#
#
#=======================================
BSNT_05124___ 1 ATG---TTTTGTAAGGAATGCGGTCAAAAAAATAATGAAGGAGCCAAGTT 47
||| |||||||||.|.|||||.||..|.||.|||||||.|||..|.||
RBAM_031140__ 1 ATGTTTTTTTGTAAGCATTGCGGCCAGCAGAACAATGAAGAAGCGCATTT 50
BSNT_05124___ 48 TTGTAAACAATGCGGCACCCCGGTCGG-------AGGGGGC---AGCAAA 87
.||||||.|||||||.|..|||.|||| ||..||| ||| ..
RBAM_031140__ 51 CTGTAAAGAATGCGGAAAACCGATCGGGAAAGGAAGCCGGCTGGAGC-GG 99
BSNT_05124___ 88 CAGGCGAATCAAGAAACAGCTAGCA----CTGCAGAAACAAGGCAGGCTC 133
||||||..|..|.||.|.||| |.| ||.||.|||
RBAM_031140__ 100 CAGGCGGCTGTAAAAGCGGCT-GAACCTGCTTCACAAA------------ 136
BSNT_05124___ 134 CGCGAAAACCGATCCCTAAGAAAACCATCATTTTATGGAGCAGCATTGCA 183
.|.||||.|||||||||||.|||||..||.|..|.|||.||.|||||||.
RBAM_031140__ 137 TGAGAAAGCCGATCCCTAAAAAAACGCTCTTCATGTGGGGCGGCATTGCC 186
BSNT_05124___ 184 GCAGCG-TGCGTTATATTAT---TCGCCGCATATAAAACCGGAGCGTACT 229
|||||| || ||.|||| |.||||||||||||||||||||.|...
RBAM_031140__ 187 GCAGCGCTG----ATCTTATTGATTGCCGCATATAAAACCGGAGCCTGGC 232
BSNT_05124___ 230 TTACTTC-----AAAGGAT--AGGTTAGTCGACAAGTTTGAACAGGCCGT 272
|.||.|| |||||.| .||.| ||| ||.||||||||.||
RBAM_031140__ 233 TGACATCTGAAAAAAGGCTCACGGAT------CAA-TTCGAACAGGCGGT 275
BSNT_05124___ 273 AAATGATGAGGATCAGGACCAAA---TCGCGACTCTGCTTACACC----G 315
..||||.|.||| ||.|| ||| ||||..|.|||||.||.|| |
RBAM_031140__ 276 TCATGACGGGGA-CACGA--AAAGACTCGCAGCCCTGCTCACTCCTTCAG 322
BSNT_05124___ 316 GTAAATGACAAGCTGAAGCTCACTAAAAATAATGTAAAACCGTTTCTTAC 365
..||| ||.||||||||.|.|.|.|..|||||.||||||.|.|||.|
RBAM_031140__ 323 ACAAA----AAACTGAAGCTGAATGAGACCAATGTCAAACCGCTCCTTGC 368
BSNT_05124___ 366 ATATTTGAAGGATCATC-CAGACAAAAAAGATGAACTTTTTGCATCGCTG 414
||| | ||.|.|||.|.||||||||..|.||||||||.
RBAM_031140__ 369 ATA-------------CGCAAAGAAACACGATGAACTGCTGGCATCGCTT 405
BSNT_05124___ 415 CG-------TGAT--GAAACAGCCCAGAAGGATATCGTATATG-CAGAAA 454
|| |.|| |||||| |||...|||||.| || |||
RBAM_031140__ 406 CGCGGCAATTCATCAGAAACA---------GATGCGGTATACGTCA-AAA 445
BSNT_05124___ 455 AAGACGGGAAAAGCCTGCTGGTATTTGACCATTACGACTTAAAAGTAGCA 504
||||.||.||||.|||.||..|.||||||||||||||..|.|||||.|..
RBAM_031140__ 446 AAGAGGGAAAAACCCTTCTTTTGTTTGACCATTACGAACTGAAAGTCGAT 495
BSNT_05124___ 505 CCTGTTTATTT-TGAAGTGAGCAGCAATTATAAAAATACCGATCTATATG 553
||.|||||||| .|.| |.|..||||||||||||....|||||||.|||.
RBAM_031140__ 496 CCGGTTTATTTCCGCA-TCACAAGCAATTATAAAGGCGCCGATCTTTATA 544
BSNT_05124___ 554 TCAATAAAGAGGAAGCCGGATCTGTAAAGAAAGCAGATCAAGCACAAACT 603
||||.|..|||.||.|.||..|.||.||.|||||.|||.||.|.|||| |
RBAM_031140__ 545 TCAACAGCGAGAAAACAGGTACGGTCAAAAAAGCCGATGAAACCCAAA-T 593
BSNT_05124___ 604 C-TCGGTCCGTA--CATTCCCGGCGAATATACAGTCTCAGCCAAACTGAC 650
| |.|||||||| || |||||.|..||.||.|....||||||.||.|.
RBAM_031140__ 594 CTTTGGTCCGTATGCA--CCCGGTGTCTACACGGCGGAAGCCAAGCTTAA 641
BSNT_05124___ 651 AAACGATGTC-GTTGACCTTGTGAAAAAGGAAGA--CATTCAGGCGGTTG 697
|||.|| |.| ||||||.||||.||||||.|||| || .||||||..|
RBAM_031140__ 642 AAATGA-GACGGTTGACGTTGTCAAAAAGCAAGAGGCA--GAGGCGGCCG 688
BSNT_05124___ 698 GCGATAGC----AGCTTTCGTGTTGATCTCTCATTGGAAGCAGACGATGT 743
|| ||| |..||..|| ||||.||..|.||.||.||.||.|||||
RBAM_031140__ 689 GC---AGCCGGAATGTTGAGT-TTGACCTGCCGTTAGACGCCGAGGATGT 734
BSNT_05124___ 744 GACATTCAGCTTAGCGGATGACA---TCAAGAGCGGGAAGGGAGATTTGC 790
|||||||| || .|||..|||| ||||.||||.|||.||.|||.|||
RBAM_031140__ 735 GACATTCA-CT--CCGGCAGACAGCTTCAAAAGCGCGAAAGGCGATCTGC 781
BSNT_05124___ 791 TGATTAACGGCAAGTCGATTCATAAAGATCCATTCAAATCCGTAACATAT 840
||||.||||||||.||..|.|||||||||||.||.|.||||||.||||||
RBAM_031140__ 782 TGATAAACGGCAAATCCGTCCATAAAGATCCGTTTACATCCGTTACATAT 831
BSNT_05124___ 841 GGTCCGCTGCTGACAGATGGATCAATGACAGCTTCAGTCGAGGCAGAATT 890
||||||||..|.||.||.||.||.||||||||..|.||.|||||.||.||
RBAM_031140__ 832 GGTCCGCTCTTAACTGACGGTTCCATGACAGCCGCCGTGGAGGCTGATTT 881
BSNT_05124___ 891 TCCGTGGGGAAAAACAAAAACTGCCGGCGTTCCGATCGATGACAAC---- 936
|||.|||||.||||..||||||||||..||.||||| ||||
RBAM_031140__ 882 TCCTTGGGGGAAAATGAAAACTGCCGATGTCCCGAT------CAACAGTA 925
BSNT_05124___ 937 --GAAATGAAGTTAACGTTAATTCCTGATCAAGATACAC-AGGAACAGAT 983
||..||.|.||||||.|.||.||.||||||||||||| |..|||| ||
RBAM_031140__ 926 CTGATGTGGACTTAACGCTTATCCCGGATCAAGATACACAACAAACA-AT 974
BSNT_05124___ 984 TATGAACACGATTGTCAAAACAACAAAACAATACTCCAAAGCTCTATCTG 1033
.|||.|||||||||||||||||||.||.||.||..|.|||||..|..|.|
RBAM_031140__ 975 CATGGACACGATTGTCAAAACAACGAAGCAGTATACAAAAGCGATGGCAG 1024
BSNT_05124___ 1034 ATGGGAATATAGCCCAGATGACAGAGGCAAGTGCCAATTGGAAGGCAG-A 1082
|.||.||||..|..||||||||.||.||..||.||...|||||.| || |
RBAM_031140__ 1025 ACGGAAATACCGATCAGATGACTGAAGCTGGTTCCGCCTGGAAAG-AGCA 1073
BSNT_05124___ 1083 GACGAAGGACA-------CCGTCGATTCTATGAAAAG--CGCGGATTCA- 1122
||||||.|| | |||.| |||||.|| | ||| ||
RBAM_031140__ 1074 GACGAAAGA-AGTGGTATCCGGC------ATGAAGAGTTC-CGG---CAC 1112
BSNT_05124___ 1123 -TACTTAAAAGAT--------AGATACTTGGAAACTGATTTTGACCTGGA 1163
|..||.||.||| |||.|| ||.| |||||.|||||
RBAM_031140__ 1113 CTTTTTGAAGGATCAGTATAAAGAGAC----AAGC----TTTGATCTGGA 1154
BSNT_05124___ 1164 CACATTTGCCCTCTCTCAAAAAAACGACGGGACG-TGGCAGGTATCGGTA 1212
..|||||||..|.||||||.|.||| ||.|| |||||.|||.|.||.
RBAM_031140__ 1155 TTCATTTGCGATTTCTCAAGAGAAC----GGCCGCTGGCAAGTAACTGTT 1200
BSNT_05124___ 1213 ACAGGAAAAGAACTCCACCAGTCTTCTACGTATAACGAC---TATACAAA 1259
|..||.|||||.||.||..|||||.|| |||..|||| .||||.||
RBAM_031140__ 1201 ATGGGTAAAGAGCTTCATGAGTCTGCT---TATTTCGACGGGAATACGAA 1247
BSNT_05124___ 1260 ATCTGAAATGACTGACGA----CAGTCCGAGTTATGAATATCTTCTTTCA 1305
..||||.||| ||.|| .|| |||||.|.|.|.|||.|.||.|||
RBAM_031140__ 1248 GCCTGATATG---GAAGAGGCTGAG-CCGAGCTTTCACTATGTACTCTCA 1293
BSNT_05124___ 1306 TATGATAAAAAACAGAAAAAGTGGATTTTCGAAGATGCAGAATCAACATT 1355
|||||||.||||||.|||||.|||.||||||||.|.||.||..|..|.|.
RBAM_031140__ 1294 TATGATACAAAACATAAAAAATGGGTTTTCGAAAAAGCTGACCCTGCCTC 1343
BSNT_05124___ 1356 CGAATCTGCAGGCACAAATATAAAGAAAATCAAAAATGATAAACCAG--- 1402
.||.|||.|.||.||||||.||||.|||||.|||||.| |||||
RBAM_031140__ 1344 AGATTCTTCTGGGACAAATGTAAAAAAAATAAAAAACG----ACCAGCCG 1389
BSNT_05124___ 1403 -AGACATACACTTCCGCCTGGGCTGGCTCGAAAAACAAAGGCAGTGAAAG 1451
|.||.||.||.|||||.|||||....|| ||||||.|.| |.||
RBAM_031140__ 1390 AAAACCTATACATCCGCATGGGCATCATC------CAAAGGAAAT-ACAG 1432
BSNT_05124___ 1452 CTCTGCAAGCGGCAATGTTACAGATGAACAAGTGACATTATTTATGGGCA 1501
||.|| ||||..||.|||.|.||.|||||.||||..||||| |.|.
RBAM_031140__ 1433 --CTTCA---GGCAGCGTGACAAACGAGCAAGTCACATCGTTTAT-GACT 1476
BSNT_05124___ 1502 G-TTATCTG-CAA---AGTCAGGCAGATGCCGTGAATCAAAATAATTTCT 1546
| |||.||| ||| |.|||.|| |||||.|..|..||.||||||.
RBAM_031140__ 1477 GATTACCTGACAAACCAATCAAGC----GCCGTCAGCCTTAACAATTTCG 1522
BSNT_05124___ 1547 CACTAATGGAAGACAGCCTTGAAAAAGGCAGTTCCCTT--TATTCCGACC 1594
|..|.|||||.|..|...|.|||.|.||.|| ||||| |||.|.||.|
RBAM_031140__ 1523 CGATCATGGAGGGTAATTTAGAAGAGGGAAG--CCCTTTGTATGCTGATC 1570
BSNT_05124___ 1595 AGCAGCATCTCGTGGCGAAACTAAATAAAGAGGGGACAACAGAAGACTTT 1644
|||||.|.||.||....|||||..|.|..||||||||.||.||||..|||
RBAM_031140__ 1571 AGCAGAAACTGGTCAAAAAACTGCACAGCGAGGGGACGACCGAAGTATTT 1620
BSNT_05124___ 1645 AATAACTATGAAGTG------AAAAGCTGGAGCCAAAATGGGTCGGCTGT 1688
| |||||||| |||||||.....||.||.||.||...|.|
RBAM_031140__ 1621 A------ATGAAGTGAATGTCAAAAGCTTTTCACAGAAAGGCTCTCATCT 1664
BSNT_05124___ 1689 CACAATTAAAACATACGAAGAATTCGAAATCACAAAATCAGGCGGCAGTC 1738
.||.|||.|.||.|||||.||.||..|.||.||.|||.|.||||||||||
RBAM_031140__ 1665 GACGATTCATACGTACGAGGAGTTTTATATTACGAAAGCCGGCGGCAGTC 1714
BSNT_05124___ 1739 CAAAGCTCAGAACATATAACTGGACCTATACCGGCGTAGTGAAGAACGGA 1788
|.|||||||||||||||||.|||||||||..||||.|.||.||..|||||
RBAM_031140__ 1715 CGAAGCTCAGAACATATAATTGGACCTATGGCGGCATTGTTAAAGACGGA 1764
BSNT_05124___ 1789 AGAATTTACTTAACGTCTATTCAATAA 1815
||||||||.|||||.||.|||||||||
RBAM_031140__ 1765 AGAATTTATTTAACATCCATTCAATAA 1791
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