Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_05122 and RBAM_031130

See DNA alignment / Visit BSNT_05122 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:36
# Commandline: needle
#    -asequence pep-align/BSNT_05122___yvbI.1.9828.seq
#    -bsequence pep-align/RBAM_031130___yvbI.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05122___yvbI-RBAM_031130___yvbI.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05122___yvbI-RBAM_031130___yvbI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05122___yvbI
# 2: RBAM_031130___yvbI
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 236
# Identity:     162/236 (68.6%)
# Similarity:   181/236 (76.7%)
# Gaps:           4/236 ( 1.7%)
# Score: 839.5
# 
#
#=======================================

BSNT_05122___      1 MYCPQCGHQTDGGNFCEKCGSPLPGQSG----YQHAAQTGAAAKQAAKQF     46
                     |||.||||.||||.||||||:|.|||.|    ...|||.|||||||:|||
RBAM_031130__      1 MYCSQCGHHTDGGKFCEKCGAPQPGQGGAGQTQGQAAQAGAAAKQASKQF     50

BSNT_05122___     47 GSFVLSVLKRPYQECKTTGGEQLISAIITMVLFSLLTPLMFYILFSDGPG     96
                     ..|||.|||||||.|||||||||:|:||.||||.|:||:|||||.|||..
RBAM_031130__     51 ALFVLDVLKRPYQTCKTTGGEQLVSSIINMVLFCLVTPIMFYILLSDGFR    100

BSNT_05122___     97 SASFTAIFLEPTIYFILFLFGLHACIFFALKIAGNQVSFKDSFSRFGAFL    146
                     ..|||||.::|.:.|.|.:|.|:..||.|||..|.|||||||.|||||||
RBAM_031130__    101 DVSFTAIVVKPALTFALCVFCLYLLIFIALKAGGAQVSFKDSLSRFGAFL    150

BSNT_05122___    147 IPFTAILILALFFFLLHTDICFTILAVGLIGAFFAIPPAMLGSYQHSYKG    196
                     |||||||:|||.|.||||.:|||||||||:||.||:||.||.||||....
RBAM_031130__    151 IPFTAILLLALIFMLLHTTVCFTILAVGLLGAAFAVPPLMLASYQHQLTT    200

BSNT_05122___    197 KIDVIYSTIVIYLIICVTFQLIIEHYVKEIFRYMLF    232
                     |.|:|||.||||||||||||..|:||:||:..|..|
RBAM_031130__    201 KADIIYSVIVIYLIICVTFQFTIKHYIKELMNYFFF    236


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