Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05122 and RBAM_031130
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:36
# Commandline: needle
# -asequence dna-align/BSNT_05122___yvbI.1.9828.seq
# -bsequence dna-align/RBAM_031130___yvbI.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05122___yvbI-RBAM_031130___yvbI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05122___yvbI-RBAM_031130___yvbI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05122___yvbI
# 2: RBAM_031130___yvbI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 760
# Identity: 497/760 (65.4%)
# Similarity: 497/760 (65.4%)
# Gaps: 110/760 (14.5%)
# Score: 1542.5
#
#
#=======================================
BSNT_05122___ 1 ATGTATTGTCCTCAATGCGGCCATCAAACAGATGGCGGAAATTTTTGTGA 50
|||||||||.||||||||||||||||.||.|||||||||||.||||||||
RBAM_031130__ 1 ATGTATTGTTCTCAATGCGGCCATCATACTGATGGCGGAAAGTTTTGTGA 50
BSNT_05122___ 51 GAAATGCGGATCACCGCTCCCC---------------GGTCAATC---AG 82
.||||||||..|.||.|..||| ||||||.| ||
RBAM_031130__ 51 AAAATGCGGGGCGCCCCAGCCCGGGCAGGGAGGCGCAGGTCAAACGCAAG 100
BSNT_05122___ 83 GCTACCAGCATGCAGCTCAAACTGGAGCCGCTGCAAAACAAGCAGCAAAA 132
|| ||.||.|||||..|.||.|||||.||.||.||.||..||||.
RBAM_031130__ 101 GC------CAGGCCGCTCAGGCCGGCGCCGCGGCTAAGCAGGCTTCAAAG 144
BSNT_05122___ 133 CAGTTCGGTTCATTTGTCTTATCCGTCC---------TGAAACGCCCTTA 173
|| |||||.|||||.|||.| |.||.||.||.||
RBAM_031130__ 145 CA---------ATTTGCCTTATTCGTGCTTGATGTGTTAAAGCGACCGTA 185
BSNT_05122___ 174 TCAGGAATGTAAAACAACAGGCGGAGAGCAGCTGATCAGC-GCAATCATT 222
|||...|||||||||.||||||||.||.|||||..||||| || |||||.
RBAM_031130__ 186 TCAAACATGTAAAACGACAGGCGGCGAACAGCTTGTCAGCAGC-ATCATC 234
BSNT_05122___ 223 ACGATGGTTCTTTTCAGTTTGCTGACCCCTTTGATGTTTTATATTCTTTT 272
|..|||||.||||||.|..||.||||.||..|.||||||||||||||.||
RBAM_031130__ 235 AACATGGTGCTTTTCTGCCTGGTGACGCCGATTATGTTTTATATTCTCTT 284
BSNT_05122___ 273 TTCAGACGG--TCCCGGAAGCGCAAGTTTTACAGCAATCTTCTTAGAGCC 320
.|||||||| |.|..|| ||..||||||||.||.|| |..|..|.
RBAM_031130__ 285 ATCAGACGGCTTTCGTGA--CGTCAGTTTTACCGCGAT----TGTGGTCA 328
BSNT_05122___ 321 AACC----ATTTATTTTATTTTATTTCTATTTGGCCTGCAT-GCATGCAT 365
|||| .||...|||...||||...|.|||.|||||.|| .|.|| ||
RBAM_031130__ 329 AACCGGCGCTTACCTTTGCATTATGCGTTTTTTGCCTGTATCTCTTG-AT 377
BSNT_05122___ 366 CTTTTTCGCCCTGAAAATC----GCGGGAAACCAAGTGTCTTTCAAGGAT 411
.|||.||||..||||...| |||.| ||.|||||.||.||.|||
RBAM_031130__ 378 TTTTATCGCTTTGAAGGCCGGCGGCGCG----CAGGTGTCATTTAAAGAT 423
BSNT_05122___ 412 TCATTCTCAAGATTCGGAGCGTTTCTCATACCGTTTACGGCTATTTTGAT 461
||..|.||.||||||||.||.|||.|.||.||||||||.|||||||||.|
RBAM_031130__ 424 TCGCTGTCCAGATTCGGGGCATTTTTGATTCCGTTTACAGCTATTTTGCT 473
BSNT_05122___ 462 TCTTGCCCTTTTCTTC-TTTTTAT-----TACATACAGACATTTGCTTTA 505
|||||||| || ||||||| |.||||||..|.|||||||.|
RBAM_031130__ 474 TCTTGCCC------TCATTTTTATGCTGCTTCATACAACCGTTTGCTTCA 517
BSNT_05122___ 506 CCATATTAGCCGTTGG---TTTA--ATCGGTGCATTCTTCGCCATTCCTC 550
||||..|.||.||.|| |||| |.|||.| ||.|||.|.||||
RBAM_031130__ 518 CCATTCTGGCTGTCGGTCTTTTAGGAGCGGCG-----TTTGCCGTGCCTC 562
BSNT_05122___ 551 CTGC-GATGCTGGGCAGTTACCAGCAT----TCA-TA-TAAAGGGAAAAT 593
| || .|||||||..||.||.|||||| ||| || |||.|.|
RBAM_031130__ 563 C-GCTCATGCTGGCGAGCTATCAGCATCAGCTCACTACTAAGGCG----- 606
BSNT_05122___ 594 TGATGTCATTTACTCAACGATTGTGATTTATCTGATCATCTGCGTTACAT 643
|||.|||||||.||....||.||.||.|||.|||||||.|||||.||.|
RBAM_031130__ 607 -GATATCATTTATTCTGTTATCGTCATCTATTTGATCATTTGCGTAACGT 655
BSNT_05122___ 644 TTCAGCTTATT----ATCGAACACTATGTCAAAGAAATTTTCCGTTATAT 689
|||| ||| |||.|.||.|||.|.||||||.|..|...||||.|
RBAM_031130__ 656 TTCA----ATTCACGATCAAGCATTATATAAAAGAACTCATGAATTATTT 701
BSNT_05122___ 690 GCTCTTTTAA 699
..||||||||
RBAM_031130__ 702 CTTCTTTTAA 711
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