Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_05108 and RBAM_031030

See DNA alignment / Visit BSNT_05108 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:35
# Commandline: needle
#    -asequence pep-align/BSNT_05108___opuBC.1.9828.seq
#    -bsequence pep-align/RBAM_031030___opuBC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05108___opuBC-RBAM_031030___opuBC.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05108___opuBC-RBAM_031030___opuBC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05108___opuBC
# 2: RBAM_031030___opuBC
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 306
# Identity:     234/306 (76.5%)
# Similarity:   266/306 (86.9%)
# Gaps:           1/306 ( 0.3%)
# Score: 1247.0
# 
#
#=======================================

BSNT_05108___      1 MKRKYLKLMIGLVLAATLTLSGCSLPGLSAAADQTIKIGAQSMSESEIIA     50
                     |..:..|.::.:.....|.|.||||||||||::.|||||||||:||||||
RBAM_031030__      1 MGNRCKKRLLAMACIGMLLLGGCSLPGLSAASEDTIKIGAQSMTESEIIA     50

BSNT_05108___     51 SMLGQLIEHHTDLKTTTIKNLGSNAVQQQALMNGEIDIAATRYTGDALTG    100
                     |||||:||||:.||||.||||||||||||:|:||:|||||||||||||||
RBAM_031030__     51 SMLGQMIEHHSGLKTTVIKNLGSNAVQQQSLINGDIDIAATRYTGDALTG    100

BSNT_05108___    101 TLRMEPEKDPDKALALTQREFKKRYNLKWYNSYGFDNTYAFTVSRELADQ    150
                     ||||||||||||||.|.||||:.||::||::||||||||.||||.:||.:
RBAM_031030__    101 TLRMEPEKDPDKALRLVQREFQNRYDMKWFDSYGFDNTYVFTVSGQLARK    150

BSNT_05108___    151 YHLETVSDVKKWAPQLKLGVDNYWMKLKGNGYQDFTKTYGMTFGGTYPMQ    200
                     ||||:||||||.|..||.|||||||||:|||||||..||||:|.||||||
RBAM_031030__    151 YHLESVSDVKKEASHLKFGVDNYWMKLRGNGYQDFMNTYGMSFEGTYPMQ    200

BSNT_05108___    201 IGLVYDAVKSGKMDIVLAYSTDGRIKSYGLKMLKDDKQFFPPYDCSPVVP    250
                     |||||||:||.||||.|||||||||.:||||.|||||:||||||||||||
RBAM_031030__    201 IGLVYDALKSRKMDIALAYSTDGRIIAYGLKTLKDDKRFFPPYDCSPVVP    250

BSNT_05108___    251 EKVLKEHPELEGIIKKMLGKIDTATMQELNYEVDGNLKEPSVVAKEYLEK    300
                     ::||||||||||:|.:|:|.|||..||::||||||.||||||||||||||
RBAM_031030__    251 DQVLKEHPELEGVINQMIGAIDTKMMQKMNYEVDGRLKEPSVVAKEYLEK    300

BSNT_05108___    301 HRYFES    306
                     |.||| 
RBAM_031030__    301 HHYFE-    305


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.