Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05108 and RBAM_031030
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:35
# Commandline: needle
# -asequence dna-align/BSNT_05108___opuBC.1.9828.seq
# -bsequence dna-align/RBAM_031030___opuBC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05108___opuBC-RBAM_031030___opuBC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05108___opuBC-RBAM_031030___opuBC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05108___opuBC
# 2: RBAM_031030___opuBC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 938
# Identity: 692/938 (73.8%)
# Similarity: 692/938 (73.8%)
# Gaps: 37/938 ( 3.9%)
# Score: 2501.5
#
#
#=======================================
BSNT_05108___ 1 AT---GAAAAG----AAAATA-------TCTCAAATTAATGATAGGTTTA 36
|| |||.|| ||||.| ||.| ||||....||.|
RBAM_031030__ 1 ATGGGGAATAGATGCAAAAAACGGCTGCTCGC-----AATGGCCTGTAT- 44
BSNT_05108___ 37 GTACTTGCGGCAACGCTGACGCTGAGCGGCTGTTCGCTTCCTGGTCTCAG 86
|||| |.||||...||..|||||||||||||.||.||..|.||
RBAM_031030__ 45 -------CGGC-ATGCTGCTCCTTGGCGGCTGTTCGCTCCCAGGATTGAG 86
BSNT_05108___ 87 CGCTGCTGCAGACCAGACCATTAAAATCGGCGCGCAAAGCATGAGCGAAT 136
|||.||..|.||..|.|||||.||||||||.|||||||||||||.|||||
RBAM_031030__ 87 CGCCGCGTCGGAGGATACCATCAAAATCGGTGCGCAAAGCATGACCGAAT 136
BSNT_05108___ 137 CAGAAATCATCGCCAGCATGCTTGGCCAGTTGATCGAACACCATA-CTGA 185
|||||||||||||.||||||||.||.|||.||||||||||.||.| |.|.
RBAM_031030__ 137 CAGAAATCATCGCGAGCATGCTCGGACAGATGATCGAACATCACAGCGGG 186
BSNT_05108___ 186 TCTCAAAACAACAACGATTAAAAATCTTGGCTCCAACGCGGTGCAGCAGC 235
| |.||.|||||....|||||||||||.||||||||.||.||.|||||||
RBAM_031030__ 187 T-TGAAGACAACGGTTATTAAAAATCTCGGCTCCAATGCCGTACAGCAGC 235
BSNT_05108___ 236 AGGCTTTAATGAACGGGGAAATTGACATTGCGGCCACAAGATATACGGGA 285
|..|.||.||.|||||.||.|||||.||.||.||.||..|.|||||.||.
RBAM_031030__ 236 AATCCTTGATAAACGGTGATATTGATATCGCCGCGACGCGCTATACAGGT 285
BSNT_05108___ 286 GACGCGCTGACAGGCACGTTGAGAATGGAACCTGAAAAAGATCCGGACAA 335
|||||||||||.||.|||.|..|.|||||.||.||||||||.||||||||
RBAM_031030__ 286 GACGCGCTGACCGGGACGCTTCGCATGGAGCCGGAAAAAGACCCGGACAA 335
BSNT_05108___ 336 AGCGCTGGCGCTTACTCAGCGGGAGTTTAAAAAAAGATACAATTTAAAAT 385
|||||||..|||...||||||.||.|||.||||.|||||..|..|.||||
RBAM_031030__ 336 AGCGCTGCGGCTCGTTCAGCGTGAATTTCAAAACAGATATGACATGAAAT 385
BSNT_05108___ 386 GGTATAACTCCTACGGGTTTGATAATACATATGCCTTTACAGTCAGCAGG 435
|||.|.|.||.|||||.||||||||||||||.|.||||||.||...|.|.
RBAM_031030__ 386 GGTTTGATTCTTACGGCTTTGATAATACATACGTCTTTACCGTTTCCGGA 435
BSNT_05108___ 436 GAGCTGGCCGACCAATACCATTTAGAGACCGTATCAGACGTTAAAAAATG 485
.||||.|||..|.|.|||||||||||..|.|||||.||.||.||||||..
RBAM_031030__ 436 CAGCTTGCCCGCAAGTACCATTTAGAATCGGTATCCGATGTCAAAAAAGA 485
BSNT_05108___ 486 GGCGCCGCAATTAAAGCTGGGCGTTGATAACTATTGGATGAAGCTCAAAG 535
.|||.|.||..|.||..|.|||||.||||||||.|||||||||||.|.||
RBAM_031030__ 486 AGCGTCTCATCTGAAATTCGGCGTAGATAACTACTGGATGAAGCTGAGAG 535
BSNT_05108___ 536 GAAACGGCTATCAGGATTTTACGAAAACCTACGGCATGACATTCGGCGGC 585
|.|||||.|||||||||||||.|||.||.|||||.|||.||||.|..|||
RBAM_031030__ 536 GCAACGGATATCAGGATTTTATGAACACATACGGAATGTCATTTGAAGGC 585
BSNT_05108___ 586 ACGTATCCGATGCAGATCGGCCTTGTGTACGACGCGGTGAAAAGCGGAAA 635
||||||||||||||||||||||||||.|||||||||.||||||||.||||
RBAM_031030__ 586 ACGTATCCGATGCAGATCGGCCTTGTTTACGACGCGCTGAAAAGCAGAAA 635
BSNT_05108___ 636 AATGGACATTGTGCTTGCGTATTCAACCGATGGAAGAATCAAGTCCTATG 685
.|||||.||.|.|||.||.|||||.|||||.||||||||||...|.||.|
RBAM_031030__ 636 GATGGATATCGCGCTCGCTTATTCCACCGACGGAAGAATCATCGCTTACG 685
BSNT_05108___ 686 GTCTCAAAATGCTAAAGGATGATAAACAATTTTTCCCGCCGTACGACTGC 735
|.||.||||.|||.|||||||||||.|..||.||.||.|||||.|||||.
RBAM_031030__ 686 GACTGAAAACGCTGAAGGATGATAAGCGGTTCTTTCCTCCGTATGACTGT 735
BSNT_05108___ 736 TCTCCGGTTGTTCCGGAAAAGGTGCTCAAAGAACATCCTGAGCTTGAAGG 785
||.||.||.||||||||..|.||..|.|||||.|||||.||.||.||.||
RBAM_031030__ 736 TCACCCGTCGTTCCGGATCAAGTATTAAAAGAGCATCCCGAACTGGAGGG 785
BSNT_05108___ 786 CATCATCAAGAAAATGCTCGGAAAAATCGACACAGCCACGATGCAGGAGC 835
|.|.|||||..|||||.||||....||.||.|||...|.|||||||.|..
RBAM_031030__ 786 CGTGATCAATCAAATGATCGGCGCGATTGATACAAAGATGATGCAGAAAA 835
BSNT_05108___ 836 TTAACTATGAAGTCGACGG-CAATCTCAAAGAACCGTCTGTCGTTGCCAA 884
|.||.||.|||||.||||| |.|| |.|||||.|||||.|||||.|||||
RBAM_031030__ 836 TGAATTACGAAGTTGACGGCCGAT-TAAAAGAGCCGTCCGTCGTGGCCAA 884
BSNT_05108___ 885 GGAATATTTAGAAAAACATCGCTATTTCGAATCGTGA- 921
||||||||||||||||||||..||.||.|||| |
RBAM_031030__ 885 GGAATATTTAGAAAAACATCATTACTTTGAAT----AA 918
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