Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_04990 and RBAM_030620

See DNA alignment / Visit BSNT_04990 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:32
# Commandline: needle
#    -asequence pep-align/BSNT_04990___yvgS.1.9828.seq
#    -bsequence pep-align/RBAM_030620___yvgS.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04990___yvgS-RBAM_030620___yvgS.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04990___yvgS-RBAM_030620___yvgS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04990___yvgS
# 2: RBAM_030620___yvgS
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 774
# Identity:     522/774 (67.4%)
# Similarity:   619/774 (80.0%)
# Gaps:           3/774 ( 0.4%)
# Score: 2700.0
# 
#
#=======================================

BSNT_04990___      1 MNQQDKEWKEEQSRIDEVLQELEKKERFLETSAGGLKHDIIGLRKSFWED     50
                     |||||||||||||||||||:||.||||.||||:||||.||:||||:||:|
RBAM_030620__      1 MNQQDKEWKEEQSRIDEVLKELRKKERSLETSSGGLKQDIVGLRKTFWDD     50

BSNT_04990___     51 VKVNFDDAHEAIETMASIKQQAELLSDREHNHRRMDQQLKRIHQLKKSPY    100
                     |.||.||||||.||.:|||||||:||:||..||...:||::|.:||.|||
RBAM_030620__     51 VTVNMDDAHEAAETFSSIKQQAEMLSERERTHRLQYRQLQKIQKLKTSPY    100

BSNT_04990___    101 FGRIDFIENGEEQAERIYIGLASCLDEKEEHFLIYDWRAPISSLYYNYSP    150
                     |||:||.|.||..:|||||||.|.:||..|.|||||||||||||||.|||
RBAM_030620__    101 FGRVDFTEKGESSSERIYIGLTSLMDENNEQFLIYDWRAPISSLYYQYSP    150

BSNT_04990___    151 GKAEYEVPGETIEGEMVLKRQFMIKNGTLKAMFNTDMTIGDEMLQEVLSH    200
                     |||.||||.|||||::.|||||:||||||||||||||||||||||||||.
RBAM_030620__    151 GKARYEVPEETIEGDITLKRQFIIKNGTLKAMFNTDMTIGDEMLQEVLSG    200

BSNT_04990___    201 HSDTQMKNIVSTIQKEQNQIIRNEKSKILIVQGAAGSGKTSAALQRVAYL    250
                     ||...|||||||||||||:|||:||||.||||||||||||||||||.|||
RBAM_030620__    201 HSGQHMKNIVSTIQKEQNEIIRDEKSKYLIVQGAAGSGKTSAALQRAAYL    250

BSNT_04990___    251 LYRHRGVIDAGQIVLFSPNFLFNSYVSSVLPELGEENMEQATFQEYIEHR    300
                     |||.|||:||.||||||||.|||||||:|||||||||||||||||||..|
RBAM_030620__    251 LYRGRGVLDARQIVLFSPNILFNSYVSAVLPELGEENMEQATFQEYIIRR    300

BSNT_04990___    301 LGRRFKCESPFDQLEYCLTETKGGDFPTRLAGITWKAGLSFQQFINEYVT    350
                     |||:|.||||::||||||||........|||.|.:||..:||..|:.|..
RBAM_030620__    301 LGRKFDCESPYEQLEYCLTEQNQDALSVRLAAIAYKASSAFQAMIDRYAC    350

BSNT_04990___    351 RLSSDGMIFKNIIFRGQKLITKEQIQSYFYSLDQNHSIPNRMEQTAKWLL    400
                     .||..|::.|.|.|||..||:||:|::|||||||...||||.|.||:|||
RBAM_030620__    351 SLSGSGLMCKQISFRGDILISKERIEAYFYSLDQQLPIPNRAELTAEWLL    400

BSNT_04990___    401 SELNKLEKKERRKDWVVHEAELLDKEDYLDVCKKLQERKRFSESTFNDYQ    450
                     :|::.||||||:|:||:.|:||||||||.:|.:.|:::....|..|:|:|
RBAM_030620__    401 AEISALEKKERKKEWVLQESELLDKEDYAEVYQTLKKQAADDEPAFDDHQ    450

BSNT_04990___    451 REQQLLAAIIVKKAFKPLKQAVRLLAFLDVTQLYLQLFSGWGGKFQHEKM    500
                     |||:||.||||.|||||:|||||.|.|||:.::||:|||.||...:.:..
RBAM_030620__    451 REQRLLGAIIVGKAFKPIKQAVRRLGFLDIKRMYLRLFSDWGADEKPDHW    500

BSNT_04990___    501 AAIGELTRSAFTDNKLLYEDAAPFLYMQDLIEGRKKNTKIKHLFIDEAQD    550
                     .:||.|||:||.:..|.||||||:||:|||:||::|||::||:|||||||
RBAM_030620__    501 ESIGALTRNAFAERSLPYEDAAPYLYLQDLLEGKRKNTQMKHVFIDEAQD    550

BSNT_04990___    551 YSPFQMAYMRSIFPAASMTVLGDINQSIYAHTIHGDQRMDACFEDDPAEY    600
                     |||||:.|::||||||.||||||::||||||||.|...:..||.:...:|
RBAM_030620__    551 YSPFQLTYIQSIFPAAKMTVLGDVSQSIYAHTITGPSSLAGCFRNGAEKY    600

BSNT_04990___    601 VRLKRTYRSTRQIVEFTKAMLQDGADIEPFNRSGEMPLVVKTEGHESLCQ    650
                     |.|||||||||||||||||:|.||.|||||||:||.|.|::|:...:..:
RBAM_030620__    601 VSLKRTYRSTRQIVEFTKALLADGDDIEPFNRNGEKPRVLRTDTENARQE    650

BSNT_04990___    651 KLAQEIGRLKKKGHETIAVICKTAQQCIQAHAHMSEYTDVRLIHKENQPF    700
                     :||..|..|::||.||:|||||||.:..:....:|..:.||||:||||||
RBAM_030620__    651 QLADTIRELRQKGWETVAVICKTAAEAKKVFQAVSAESGVRLINKENQPF    700

BSNT_04990___    701 QKGVCVIPVYLAKGIEFDAVLVYDASEEHYHTEHDRRLLYTACTRAMHML    750
                     ||||||||||||||||||||:..|||...|.:||||:|||||||||||.|
RBAM_030620__    701 QKGVCVIPVYLAKGIEFDAVIAADASAAQYKSEHDRKLLYTACTRAMHHL    750

BSNT_04990___    751 AVFYTGEASPFVTAVPPHLYQMAE    774
                     .|...||.|||:..||..|:.   
RBAM_030620__    751 TVLSPGEHSPFIKEVPAGLFV---    771


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

Amino acid alignment: BSNT_04990 and RBAM_030620

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
