Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04990 and RBAM_030620
See
Amino acid alignment /
Visit
BSNT_04990 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:32
# Commandline: needle
# -asequence dna-align/BSNT_04990___yvgS.1.9828.seq
# -bsequence dna-align/RBAM_030620___yvgS.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04990___yvgS-RBAM_030620___yvgS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04990___yvgS-RBAM_030620___yvgS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04990___yvgS
# 2: RBAM_030620___yvgS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2441
# Identity: 1671/2441 (68.5%)
# Similarity: 1671/2441 (68.5%)
# Gaps: 241/2441 ( 9.9%)
# Score: 5388.5
#
#
#=======================================
BSNT_04990___ 1 ATGAATCAGCAGGATAAGGAATGGAAGGAAGAGCAGTCGAGAATAGATGA 50
||||||||||||||||||||||||||||||||||||||.|||||||||||
RBAM_030620__ 1 ATGAATCAGCAGGATAAGGAATGGAAGGAAGAGCAGTCAAGAATAGATGA 50
BSNT_04990___ 51 GGTGCTGCAGGAGCTCGAAAAAAAAGAGCGGTTTCTGGAAACGTCTGCGG 100
.||||||.||||||||...|||||||||||||.|||||||||.||..|||
RBAM_030620__ 51 AGTGCTGAAGGAGCTCCGCAAAAAAGAGCGGTCTCTGGAAACATCATCGG 100
BSNT_04990___ 101 GCGGGTTGAAGCATGATATCATCGGATTAAGAAAAAGCTTTTGGGAGGAT 150
||||.||||||||.|||||..||||..|.|||||||..||||||||.|||
RBAM_030620__ 101 GCGGATTGAAGCAGGATATTGTCGGGCTGAGAAAAACGTTTTGGGATGAT 150
BSNT_04990___ 151 GTTAAGGTTAATTTTGATGATGCCCATGAAGCGATTGAAACGATGGCAAG 200
||.|..||.|||.|.|||||.|||||.||||||..|||.||..|..||||
RBAM_030620__ 151 GTCACCGTGAATATGGATGACGCCCACGAAGCGGCTGAGACATTTTCAAG 200
BSNT_04990___ 201 CATTAAGCAGCAGGCAGAGCTGCTGTCTGATCGGGAACACAATCATCGGC 250
||||||.||||||||.||..||||.||.||.||.||||..|..|||||||
RBAM_030620__ 201 CATTAAACAGCAGGCGGAAATGCTTTCAGAACGTGAACGGACGCATCGGC 250
BSNT_04990___ 251 GCATGGATCA------GCAGC-TCAAACGAATTCATCAATTAAAAAAATC 293
.||| ||||| ||||| .|||.||..|..|.||||..||
RBAM_030620__ 251 ------TTCAATACCGGCAGCTTCAAA-AAATCCAAAAGCTGAAAACCTC 293
BSNT_04990___ 294 GCCTTATTTCGGCCGGATTGATTTTATTGAAAACGGCGAGGAG------- 336
.|||||.||||||||..|.|||||||..|||||.|| ||||
RBAM_030620__ 294 TCCTTACTTCGGCCGTGTCGATTTTACGGAAAAAGG---GGAGTCCTCTT 340
BSNT_04990___ 337 -CAGGCAGAGCGAATTTATATCGGTTTAGCTTCCTGTTTGGATGAGAAGG 385
| |||||.|||||||||||..|..||||.|...|||||||.||..
RBAM_030620__ 341 CC-----GAGCGGATTTATATCGGGCTGACTTCTTTGATGGATGAAAACA 385
BSNT_04990___ 386 AGGAACACTTTCTGATTTATGACTGGAGGGCGCCGATATCAAGTTTGTAC 435
|.||.||.|||||.||||||||.|||.|.|||||.||.|||..|.|.|||
RBAM_030620__ 386 ACGAGCAATTTCTCATTTATGATTGGCGCGCGCCCATCTCATCTCTTTAC 435
BSNT_04990___ 436 TA-CAATTATTCCCCAGGAAAAGCGGAGTACGAGGTGCCCGGTGAAACGA 484
|| ||| ||||||||.||||||||....||.||.||.||||..|||||||
RBAM_030620__ 436 TATCAA-TATTCCCCGGGAAAAGCCCGCTATGAAGTTCCCGAAGAAACGA 484
BSNT_04990___ 485 TAGAAGGGGAAATGGTGCTGAAACGCCAGTTTATGATCAAAAACGGCACT 534
|||||||.||.||....|||||.||.||||||||.||.||||||||.||.
RBAM_030620__ 485 TAGAAGGAGACATCACACTGAAGCGGCAGTTTATCATTAAAAACGGGACG 534
BSNT_04990___ 535 CTCAAGGCGATGTTTAATACCGATATGACGATTGGTGATGAAATGCTGCA 584
||.||.|||||||||||.||.|||||||||||||||||.|||||||||||
RBAM_030620__ 535 CTTAAAGCGATGTTTAACACGGATATGACGATTGGTGACGAAATGCTGCA 584
BSNT_04990___ 585 AGAGGTATTAAGCCATCACTCCGATAC-CCAAATGAAAAACATCGTGTCT 633
||||||..|.|||...||.|||| .|| .||.|||||||||||||||||.
RBAM_030620__ 585 AGAGGTGCTGAGCGGGCATTCCG-GACAGCATATGAAAAACATCGTGTCA 633
BSNT_04990___ 634 ACGATTCAGAAAGAACAAAATCAGATTATCCGTAATGAAAAAAGCAAGAT 683
||.||.||.||||||||.||..|.||.|||||..||||||||||||| ||
RBAM_030620__ 634 ACCATCCAAAAAGAACAGAACGAAATCATCCGGGATGAAAAAAGCAA-AT 682
BSNT_04990___ 684 -CCTGATCGTGCAGGGAGCGGCTGGCAGCGGGAAAACATCGGCTGCGCTT 732
.||.|||||.||||||||.||.||.||||||||||||||.||.||||||
RBAM_030620__ 683 ATCTCATCGTTCAGGGAGCCGCCGGAAGCGGGAAAACATCCGCGGCGCTT 732
BSNT_04990___ 733 CAGCGTGTCGCTTATTTGTTATACAGGCACCGTGGCGTCATTGATGCCGG 782
|||||.|.||||||.|||.|.|||.|....||.||.||..||||||||.|
RBAM_030620__ 733 CAGCGGGCCGCTTACTTGCTGTACCGCGGGCGCGGGGTGCTTGATGCCCG 782
BSNT_04990___ 783 ACAAATCGTTTTGTTTTCTCCCAACTTCTTATTTAACAGCTATGTCTCCT 832
.||.||.||.||||||||.||.|||.|.||.||.|||||.|||||.|||.
RBAM_030620__ 783 TCAGATTGTATTGTTTTCCCCGAACATTTTGTTCAACAGTTATGTTTCCG 832
BSNT_04990___ 833 CTGTTTTGCCGGAGTTAGGAGAAGAGAATATGGAGCAGGCGACGTTTCAG 882
|.||.||||||||.||.|||||||||||||||||||||||.||.||||||
RBAM_030620__ 833 CCGTATTGCCGGAATTGGGAGAAGAGAATATGGAGCAGGCCACCTTTCAG 882
BSNT_04990___ 883 GAATATATCGAGCAT----CGTCTTGGCCGCAGGTTCAAATGTGAAAGCC 928
|||||||| ||| ||.||.||.||.|.|||..|.||||||||||
RBAM_030620__ 883 GAATATAT----CATCCGCCGGCTCGGACGAAAGTTTGATTGTGAAAGCC 928
BSNT_04990___ 929 CCTTTGATCAGCTCGAATATTGCCTGACCGAAACAAA---GGGAGGCGAT 975
|.|..||.|||||.||||||||||||||.| |||||| .|||.|| |.
RBAM_030620__ 929 CGTACGAGCAGCTTGAATATTGCCTGACTG-AACAAAATCAGGACGC-AC 976
BSNT_04990___ 976 TTTCCAACAAGGCTTGCGGGAATCACATGGAAGGCGGGTTTATC--CTTT 1023
||||| ..||||||.||.|..||..|.|..||.||| |.||| ||||
RBAM_030620__ 977 TTTCC-GTAAGGCTCGCAGCCATTGCTTACAAAGCG---TCATCAGCTTT 1022
BSNT_04990___ 1024 CAGCAATTCATTAATGA---ATACG-----TCACACGGCTTTCC-TCTGA 1064
| ||...|||.|.||| .|||| || ||||||| .||
RBAM_030620__ 1023 C--CAGGCCATGATTGACCGCTACGCCTGCTC-----GCTTTCCGGCT-- 1063
BSNT_04990___ 1065 CGGG-ATGATTTTTAAAAATATTATATTCCGCGGACAAAAGCTGATCACA 1113
|||| .||||.|.||||.|.||.|..|||||.|||.|.|..|||||..||
RBAM_030620__ 1064 CGGGCCTGATGTGTAAACAGATCAGCTTCCGGGGAGACATCCTGATTTCA 1113
BSNT_04990___ 1114 AAGGAGCAAATTCAATCCTATTTTTACTCATTGGATCAAAATCACTCCAT 1163
||.||.|..|||.||.||||||||||.||..|.|||||..|.|...|.||
RBAM_030620__ 1114 AAAGAACGGATTGAAGCCTATTTTTATTCGCTTGATCAGCAGCTGCCGAT 1163
BSNT_04990___ 1164 TCCGAATCGGA-TGGAGCAAACCGCGAAGTGGCT----GCTGAGTGAGCT 1208
|||||| |.|| .|||||..||.|||.|.||||| ||.||
RBAM_030620__ 1164 TCCGAA-CAGAGCGGAGCTGACAGCGGAATGGCTTCTCGCGGA------- 1205
BSNT_04990___ 1209 TAACAAG----CTTGAGAAAAAGGAACGGCGAAAGGATTGGGTCGTTCAT 1254
||..|| ||.||.||||||||.||....|||||.||||||.|.||.
RBAM_030620__ 1206 -AATCAGCGCTCTCGAAAAAAAGGAGCGTAAGAAGGAATGGGTCTTGCAG 1254
BSNT_04990___ 1255 GA-AGCTGAGCTGCTTGACAAAGAGGACTACTTG--GACGTGTGCAAAAA 1301
|| ||| |||||||||||.||.||.||||| || ||.||.|...|||.
RBAM_030620__ 1255 GAGAGC-GAGCTGCTTGATAAGGAAGACTA--TGCTGAGGTTTATCAAAC 1301
BSNT_04990___ 1302 ACTGCAAGAA--AGG----AAACGATTCAGCGAGAGTACGTTTAACGATT 1345
||| |||||| ||| |.|.||| ||...|.|.|||.||||..
RBAM_030620__ 1302 ACT-CAAGAAGCAGGCGGCAGATGAT-----GAACCTGCATTTGACGACC 1345
BSNT_04990___ 1346 ATCAAAGAGAGCAGCAGCTGCTTGCCGCCATCATTGTGAAAAAAGCTTTC 1395
||||..|.||.||||.||||||||.||||||.|||||....|||||.||.
RBAM_030620__ 1346 ATCAGCGCGAACAGCGGCTGCTTGGCGCCATTATTGTCGGCAAAGCCTTT 1395
BSNT_04990___ 1396 AAACCGCTCAAGCAGGCGGTCAGGCTCCTTGCATTTCTTGATGTTACACA 1445
||||||.|.||||||||.|||||.|..||.|..|||||.|||.|.|.||.
RBAM_030620__ 1396 AAACCGATTAAGCAGGCCGTCAGACGGCTCGGCTTTCTCGATATAAAACG 1445
BSNT_04990___ 1446 GCTGTATTTGCAATTGTTTTCTGGCTGGGGAGGAAAATTTCAGCATGAGA 1495
|.|||||.|.|...|||||||.|.|||||||| |.| ||||.|
RBAM_030620__ 1446 GATGTATCTCCGGCTGTTTTCAGACTGGGGAG--------CTG-ATGAAA 1486
BSNT_04990___ 1496 AGATGGCCGCGA----TAGGTGAGC----------TGACCCGTTCGGCAT 1531
|| |.||| |.||.|||| |||||.|....||||
RBAM_030620__ 1487 AG-----CCCGATCATTGGGAGAGCATCGGCGCTTTGACCAGAAACGCAT 1531
BSNT_04990___ 1532 TT-----ACGGATAATAAATTGCTCTATGAGGACGCGGCACCGTTTCTTT 1576
|| |||| |.|.|| |..|||||.||.||.||.||||.|||.|
RBAM_030620__ 1532 TTGCAGAACGG----TCACTT-CCGTATGAAGATGCCGCTCCGTATCTGT 1576
BSNT_04990___ 1577 ATATGCAGGATCTGATTGAGGGCAGAAAG-AAAAATACGAAGATCAAACA 1625
||.|||||||||||.|.||.|| |.|||| |||||.||..|.||.||.||
RBAM_030620__ 1577 ATTTGCAGGATCTGTTAGAAGG-AAAAAGAAAAAACACACAAATGAAGCA 1625
BSNT_04990___ 1626 TCTATTTATTGACGAAGCCCAGGACTATTCACCGTTTCAGATGGCTTACA 1675
..|.||.|||||.|||||.|||||.|||||.||.||||||.|..|.||.|
RBAM_030620__ 1626 CGTCTTCATTGATGAAGCGCAGGATTATTCCCCATTTCAGCTCACGTATA 1675
BSNT_04990___ 1676 TGAGAAGCATTTTTCCGGCTGCCAGCATGACAGTGCTCGGTGATATCAAT 1725
|...||||||.||.||.||.||.|..|||||.||||||||||||.|||..
RBAM_030620__ 1676 TTCAAAGCATCTTCCCAGCGGCAAAGATGACGGTGCTCGGTGATGTCAGC 1725
BSNT_04990___ 1726 CAGTCCATCTACGCGCATACCATACACGGG---------GATCAGCGTAT 1766
|||||.||.||.||.||.||||| .||||| ..||..||
RBAM_030620__ 1726 CAGTCGATTTATGCCCACACCAT-TACGGGCCCTTCTTCCCTCGCCG--- 1771
BSNT_04990___ 1767 GGATGCGTGCTTTGAGGATGATCCTGCTGAGTATGTTCGTTTAAAGAGAA 1816
|| ||||||....|||.|.|.|...|||||||..|..|.|||.|.|
RBAM_030620__ 1772 ----GC-TGCTTTCGCAATGGTGCAGAAAAGTATGTCAGCCTGAAGCGGA 1816
BSNT_04990___ 1817 CATACAGATCAACAAGGCAGATTGTCGAGTTTACCAAAGCGATGCTTCAA 1866
|.||||||||.||..||||||||||.||.|||||.||||||.||||....
RBAM_030620__ 1817 CTTACAGATCGACGCGGCAGATTGTTGAATTTACGAAAGCGCTGCTGGCT 1866
BSNT_04990___ 1867 GATGGAGCGGATATTGAGCCGTTTAATAGAAGCGGGGAAATGCCGCTCGT 1916
||.||.|..||.||||||||.|||||..|.|.||||||||..||||..||
RBAM_030620__ 1867 GACGGCGATGACATTGAGCCTTTTAACCGGAACGGGGAAAAACCGCGTGT 1916
BSNT_04990___ 1917 TGTTAAAACTGAAGGACATGAGAGCCTTTGCCAAAAGCTCGCGCAAGA-- 1964
|.| .|.||.|||.| .||| |||.||.|| |||.||
RBAM_030620__ 1917 TTT----GCGGACGGATA-CAGA---------AAATGCGCG-GCAGGAAC 1951
BSNT_04990___ 1965 AATTGGCCG-------------GCTCAAGA-AAAAAGGGCACGAAACAAT 2000
|||||||.| |||| ||| |||||||....||.||..|
RBAM_030620__ 1952 AATTGGCGGATACAATCCGGGAGCTC-AGACAAAAAGGCTGGGAGACGGT 2000
BSNT_04990___ 2001 AGCCGTCATCTGCAAGACTGC----GCAGC------AATGCATACAGGCG 2040
.||||||||||||||.||.|| |.||| |.|| .|.||||||
RBAM_030620__ 2001 CGCCGTCATCTGCAAAACGGCCGCGGAAGCCAAAAAAGTG-TTTCAGGCG 2049
BSNT_04990___ 2041 --CA-CGCCCACATGAGTGAATATACAGATGTTCGCCTGATTCATAAAGA 2087
|| |||| ||| |..|.|||.|||.||||..|||||||
RBAM_030620__ 2050 GTCAGCGCC-----GAG-------AGCGGTGTCCGCTTGATCAATAAAGA 2087
BSNT_04990___ 2088 AAATCAACCATTTCAAAAGGGTGTTTGCGTGATTCCGGTGTATTTAGCGA 2137
|||.||.||.||||||||.||.||.|||||.|||||.||.|||||.||.|
RBAM_030620__ 2088 AAACCAGCCTTTTCAAAAAGGGGTATGCGTCATTCCCGTTTATTTGGCAA 2137
BSNT_04990___ 2138 AGGGAATTGAATTTGACGCAGTGCTTGTCTATGATGCATCTGAAGAACAC 2187
|.||.|||||.||||||||.||..|||.|..||||||.||||..|..||.
RBAM_030620__ 2138 AAGGCATTGAGTTTGACGCCGTCATTGCCGCTGATGCCTCTGCTGCCCAG 2187
BSNT_04990___ 2188 TATCATACAGAGCACGACCGCAGGCTTTTATATACTGCGTGCACCCGTGC 2237
||..|.|..||.||.|||||.|.|||.||||||||.||.||.||.||.||
RBAM_030620__ 2188 TACAAAAGCGAACATGACCGTAAGCTGTTATATACGGCCTGTACGCGGGC 2237
BSNT_04990___ 2238 GATGCA-CATGCTGGCGGTATTTTATACAGGTGAAGCCAGTCCGTTTGTA 2286
|||||| ||| |||.|.|||||.|.|.|.||.|||..|..|||.|||.|.
RBAM_030620__ 2238 GATGCATCAT-CTGACCGTATTGTCTCCGGGAGAACACTCTCCTTTTATT 2286
BSNT_04990___ 2287 ACCGCTGTG-CCGCCTCACTTATATCAGATGGCTG-AATGA 2325
|..|..||| ||||| ..||||| || .|| ||
RBAM_030620__ 2287 AAAGAAGTGCCCGCC-GGCTTAT-TC------GTGTAA--- 2316
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.