Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_04989 and RBAM_030610

See DNA alignment / Visit BSNT_04989 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:32
# Commandline: needle
#    -asequence pep-align/BSNT_04989___yvgR.1.9828.seq
#    -bsequence pep-align/RBAM_030610___yvgR.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04989___yvgR-RBAM_030610___yvgR.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04989___yvgR-RBAM_030610___yvgR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04989___yvgR
# 2: RBAM_030610___yvgR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 605
# Identity:     472/605 (78.0%)
# Similarity:   539/605 (89.1%)
# Gaps:           3/605 ( 0.5%)
# Score: 2528.5
# 
#
#=======================================

BSNT_04989___      1 MQLQVMNSPFNQEQAELLNRLLPTLTESQKIWLSGYLSAQSVSAQEAAGA     50
                     |||||||||||||||||||||||||||||||||||||:|....:.|.| |
RBAM_030610__      1 MQLQVMNSPFNQEQAELLNRLLPTLTESQKIWLSGYLAAARSESGETA-A     49

BSNT_04989___     51 PAAAVSAEAPAPAVSKEVTVLYGSQTGNAQGLAENAGKQLEQSGFQVTVS    100
                     |||...||  :||||:|||||||||||||:|||:...|.||:.||||||:
RBAM_030610__     50 PAAPAPAE--SPAVSREVTVLYGSQTGNAEGLAKQTVKTLEERGFQVTVA     97

BSNT_04989___    101 SMSDFKPNQLKKVTNLLIVVSTHGEGEPPDNALSFHEFLHGRRAPKLEDL    150
                     ||:|||||.||||.||||||||||||:||||||:||||||||||||||.|
RBAM_030610__     98 SMNDFKPNNLKKVNNLLIVVSTHGEGDPPDNALAFHEFLHGRRAPKLEAL    147

BSNT_04989___    151 RFSVLALGDSSYEFFCQTGKEFDQRLEELGGKRISPRVDCDLDYDEPAAE    200
                     |:|||||||||||||||||||||:||:||||.:::||||||||||||.:|
RBAM_030610__    148 RYSVLALGDSSYEFFCQTGKEFDERLQELGGTQLAPRVDCDLDYDEPFSE    197

BSNT_04989___    201 WLEGVLKGLNEAGGGSAAPAPPAASQTGESSYSRTNPFRAEVLENLNLNG    250
                     ||:.|:.||||..|...|.||......|||.||||||||||||||:||||
RBAM_030610__    198 WLDAVIGGLNEGAGNQTAEAPAETPALGESVYSRTNPFRAEVLENINLNG    247

BSNT_04989___    251 RGSNKETRHVELSLEGSGLTYEPGDSLGVYPENDPELVELLLKEMNWDPE    300
                     |||||||||:|||||||||:|:||||||:||||||.||:.|:.|:.|||:
RBAM_030610__    248 RGSNKETRHLELSLEGSGLSYQPGDSLGIYPENDPALVDELINELKWDPK    297

BSNT_04989___    301 EIVTLNKQGDVRPLKEALISHYEITVLTKPLLEQAAQLTGNDELRELLAP    350
                     :.|.:||||:..|||:||.||:||||||||.|::|||.|.:.:|.||||.
RBAM_030610__    298 QEVAVNKQGERLPLKDALTSHFEITVLTKPFLQKAAQFTADQKLSELLAE    347

BSNT_04989___    351 GNEENVKAYIEGRDLLDLVRDYGPFSVSAQEFVSILRKMPARLYSIASSL    400
                     ||||.:||||.||||||||||:||:..:|::|:|||||||||||||||||
RBAM_030610__    348 GNEEQLKAYINGRDLLDLVRDFGPWEATAEDFLSILRKMPARLYSIASSL    397

BSNT_04989___    401 SANPDEVHLTIGAVRYDAHGRERKGVCSILCAERLQPGDTLPVYVQHNQN    450
                     .|||:|||||||||||||||||||||||||||||||||||||:|:|||||
RBAM_030610__    398 EANPEEVHLTIGAVRYDAHGRERKGVCSILCAERLQPGDTLPIYIQHNQN    447

BSNT_04989___    451 FKLPKDPETPIIMVGPGTGVAPFRSFMQEREETGAEGKAWMFFGDQRFVT    500
                     ||||::|:|||||||||||:||||||||||||||||||.|:|||||.|||
RBAM_030610__    448 FKLPENPDTPIIMVGPGTGIAPFRSFMQEREETGAEGKTWLFFGDQHFVT    497

BSNT_04989___    501 DFLYQTEWQNWLKDGVLTKMDVAFSRDTEEKVYVQHRMLEHSAELFEWLQ    550
                     |||||||||.||::|||||||||||||:||||||||||.|.|.||:||||
RBAM_030610__    498 DFLYQTEWQKWLQNGVLTKMDVAFSRDSEEKVYVQHRMKEQSKELYEWLQ    547

BSNT_04989___    551 EGAAVYICGDEKHMAHDVHNTLLEIIEKEGNMSREEAEAYLADMQQQKRY    600
                     :||:|||||||:|||||||..||:||::||.||||:||::||||||:|||
RBAM_030610__    548 QGASVYICGDEQHMAHDVHQALLDIIQEEGGMSREKAESFLADMQQKKRY    597

BSNT_04989___    601 QRDVY    605
                     |||||
RBAM_030610__    598 QRDVY    602


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