Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04989 and RBAM_030610
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:32
# Commandline: needle
# -asequence dna-align/BSNT_04989___yvgR.1.9828.seq
# -bsequence dna-align/RBAM_030610___yvgR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04989___yvgR-RBAM_030610___yvgR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04989___yvgR-RBAM_030610___yvgR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04989___yvgR
# 2: RBAM_030610___yvgR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1869
# Identity: 1391/1869 (74.4%)
# Similarity: 1391/1869 (74.4%)
# Gaps: 111/1869 ( 5.9%)
# Score: 5108.5
#
#
#=======================================
BSNT_04989___ 1 TTGCAACTTCAGGTAATGAACAGTCCGTTTAATCAGGAGCAGGCAGAGCT 50
||||||||||||||.|||||||||||||||||||||||||||||||||||
RBAM_030610__ 1 TTGCAACTTCAGGTCATGAACAGTCCGTTTAATCAGGAGCAGGCAGAGCT 50
BSNT_04989___ 51 CCTTAACCGCCTTCTGCCGACCTTGACCGAATCCCAGAAAATCTGGCTGA 100
|||||||||||||||||||||||||||.|||||.||||||||||||||||
RBAM_030610__ 51 CCTTAACCGCCTTCTGCCGACCTTGACAGAATCACAGAAAATCTGGCTGA 100
BSNT_04989___ 101 GCGGATATTT------------------ATCCGCTCAATCTGTTTCCGCC 132
||||.||||| |||||.|.||.|.| ||||.
RBAM_030610__ 101 GCGGTTATTTGGCTGCGGCCCGGTCCGAATCCGGTGAAACAG---CCGCA 147
BSNT_04989___ 133 CAAGAAGCTGCGGGTGCGCCGGCGGCAGCTGTGT-CTGC-GGAAGCACCG 180
| |.|.|||.||||| | |||| |.||||
RBAM_030610__ 148 C---------CCGCTGCTCCGGC----------TCCTGCAGAAAGC---- 174
BSNT_04989___ 181 GCACCGGCCGTTTCAAAAGAAGTGACCGTTCTTTATGGTTCACAGACGGG 230
|||||.||.||||.||||||||||||..|.||.||.||.||.|||||
RBAM_030610__ 175 ---CCGGCAGTCTCAAGAGAAGTGACCGTATTATACGGATCGCAAACGGG 221
BSNT_04989___ 231 AAACGCACAGGGGCTTGCAGAAAATGCCGG-CAAGCAGCTTGAACAGAGC 279
|||.||..|.||.||||| ||||..|.||| .|||..||||||..|..|.
RBAM_030610__ 222 AAATGCGGAAGGTCTTGC-GAAACAGACGGTAAAGACGCTTGAGGAACGG 270
BSNT_04989___ 280 GGTTTTCAAGTGACCGTCTCATCCATGAGCGATTTTAAGCCGAATCAGCT 329
||.||.||.||.||||||.|.||.||||.||||||.|||||||||.|.||
RBAM_030610__ 271 GGATTCCAGGTCACCGTCGCGTCGATGAACGATTTCAAGCCGAATAATCT 320
BSNT_04989___ 330 GAAGAAGGTAACCAATCTTTTAATCGTCGTCAGTACTCATGGAGAAGGCG 379
|||.||.||||..|||.|..|.|||||.||.||.||.||.||||||||||
RBAM_030610__ 321 GAAAAAAGTAAATAATTTACTGATCGTGGTGAGCACGCACGGAGAAGGCG 370
BSNT_04989___ 380 AGCCGCCTGATAACGCGCTGTCGTTTCACGAATTTCTGCACGGAAGACGG 429
|.|||||.||||||||||||.|.|||||.||||||||.|||||.|||||.
RBAM_030610__ 371 ATCCGCCGGATAACGCGCTGGCCTTTCATGAATTTCTTCACGGCAGACGC 420
BSNT_04989___ 430 GCGCCTAAGCTTGAAGATCTGCGTTTTTCCGTTTTGGCGCTTGGTGACAG 479
|||||.||||||||||..||.||||..||||||||||||||.||.|||||
RBAM_030610__ 421 GCGCCGAAGCTTGAAGCGCTCCGTTACTCCGTTTTGGCGCTCGGGGACAG 470
BSNT_04989___ 480 TTCGTACGAATTTTTCTGCCAGACAGGGAAAGAATTTGATCAGCG-CTTA 528
.|||||.|||||||||||||||||.||.|||||.|||||..|||| |||
RBAM_030610__ 471 CTCGTATGAATTTTTCTGCCAGACCGGCAAAGAGTTTGACGAGCGTCTT- 519
BSNT_04989___ 529 GAAGAACTCGGCGGAAAACGGATTTCTCCGCGCGTTGATTGCGATCTTGA 578
.||||.||||||||.|..|.|.||.|.|||||.|||||||||||||||||
RBAM_030610__ 520 CAAGAGCTCGGCGGCACCCAGCTTGCGCCGCGGGTTGATTGCGATCTTGA 569
BSNT_04989___ 579 CTATGATGAACCGGCAGCCGAATGGCTTGAGGGTGT-ATTGAAG-GGATT 626
.||||||||.|||....|.|||||||||||.|..|| ||.| | ||.||
RBAM_030610__ 570 TTATGATGAGCCGTTTTCTGAATGGCTTGACGCGGTCATCG--GCGGTTT 617
BSNT_04989___ 627 AAATGAAGCTGGGGGCGG-------AAGCGCC---GCGCCTGC---GCCG 663
.||.||| ||.|||| ||..||| |||||||| |.||
RBAM_030610__ 618 GAACGAA----GGAGCGGGAAATCAAACAGCCGAAGCGCCTGCCGAGACG 663
BSNT_04989___ 664 CCGGCTGCGTCTCAAACCGGTGAGTCTTCG--TATTCCAGAACAAACCCG 711
||||| ||| ||||||.|| || |||||||||||.||||||
RBAM_030610__ 664 CCGGC----TCT-----CGGTGAATC--CGTTTATTCCAGAACGAACCCG 702
BSNT_04989___ 712 TTTCGGGCTGAAGTGTTAGAAAATTTAAATTTAAACGGCAGAGGATCAAA 761
||||||||.||.||..|.||.||..|.|||.|.|||||..|.||.||.||
RBAM_030610__ 703 TTTCGGGCGGAGGTTCTTGAGAACATCAATCTGAACGGACGCGGTTCGAA 752
BSNT_04989___ 762 TAAAGAAACACGCCATGTGGAGCTGTCTCTTGAAGGATCAGGCCTGACTT 811
||||||.|||||||||.|.|||||.||.||||||||.||.||.||..|.|
RBAM_030610__ 753 TAAAGAGACACGCCATCTTGAGCTTTCGCTTGAAGGGTCGGGTCTCTCGT 802
BSNT_04989___ 812 ACGAGCCTGGTGACAGCCTCGGCGTCTATCCAGAAAACGATCCGGAAC-- 859
|..||||.||.||||||||||||.|||||||.|||||.|||||||..|
RBAM_030610__ 803 ATCAGCCCGGAGACAGCCTCGGCATCTATCCGGAAAATGATCCGGCGCTC 852
BSNT_04989___ 860 -TTGTCGAGCTGCTCCTTAAGGAAATGAATTGGGACCCGGAA---GAAAT 905
|||..||||||.|| ||.||..||||.||||||||..|| |||
RBAM_030610__ 853 GTTGATGAGCTGATC---AATGAGCTGAAATGGGACCCAAAACAGGAA-- 897
BSNT_04989___ 906 TGTGACGCTTAATAAGCAAGGTGATGTCCGTCCGCTGAAAGAAGCGCTGA 955
|||.||.|.|||||.|||||.||...||..|||||||||||.|||||.|
RBAM_030610__ 898 -GTGGCGGTGAATAAACAAGGAGAGCGCCTCCCGCTGAAAGATGCGCTTA 946
BSNT_04989___ 956 TTTCTCACTATGAGATTACCGTTCTCACAAAACCGCTTCTTG-AACAGGC 1004
.||||||.|.|||.||.||||||.|.||||||||| |||.|| ||.||||
RBAM_030610__ 947 CTTCTCATTTTGAAATAACCGTTTTAACAAAACCG-TTCCTGCAAAAGGC 995
BSNT_04989___ 1005 AGCCCAGCTGACAGGGAACGATGAGCTTAGAGAGCTTTTAGCCCCGGGAA 1054
.||.|||.|.||.|...||.|..||||.||.||.|||.|.|||...||||
RBAM_030610__ 996 CGCACAGTTTACGGCTGACCAAAAGCTGAGTGAACTTCTGGCCGAAGGAA 1045
BSNT_04989___ 1055 ATGAGGAGAATGTAAAAGCCTATATTGAAGGGCGCGATTTGCTTGATCTC 1104
|.||.|||.|..|.|||||.||.||..|.||.||.|||.|||||||||||
RBAM_030610__ 1046 ACGAAGAGCAGCTGAAAGCGTACATCAACGGCCGTGATCTGCTTGATCTC 1095
BSNT_04989___ 1105 GTCCGTGACTATGGCCCATTTAGTGTA---TCTGCGCAGGAGTTTGTCTC 1151
|||||.||.|..||.||.| |.|.| .|.|||.|.||.|||.|.||
RBAM_030610__ 1096 GTCCGGGATTTCGGTCCGT---GGGAAGCGACAGCGGAAGACTTTCTTTC 1142
BSNT_04989___ 1152 GATTTTGCGAAAAATGCCTGCCCGCCTTTATTCGATTGCAAGCAGTTTAT 1201
.||..||||.||||||||.|||||.||.||||||||.||||||||||||.
RBAM_030610__ 1143 CATCCTGCGTAAAATGCCGGCCCGGCTCTATTCGATCGCAAGCAGTTTAG 1192
BSNT_04989___ 1202 CCGCAAATCCGGATGAAGTGCATTTAACAATCGGCGCAGTCCGCTACGAT 1251
..||.||||||||.||.||||||.|.||||||||.||.|||.|.||.||.
RBAM_030610__ 1193 AAGCGAATCCGGAAGAGGTGCATCTGACAATCGGAGCGGTCAGATATGAC 1242
BSNT_04989___ 1252 GCGCATGGCCGTGAACGAAAAGGCGTCTGCTCGATTTTGTGCGCGGAACG 1301
|||||.|||.|.||||||||||||||||||...|||.|.||.||||||.|
RBAM_030610__ 1243 GCGCACGGCAGAGAACGAAAAGGCGTCTGCAGCATTCTTTGTGCGGAAAG 1292
BSNT_04989___ 1302 TCTGCAGCCGGGAGACACACTGCCGGTTTATGTACAGCACAATCAAAACT 1351
.||.|||||||||||.||.||.|||.||||..|.||||||||.|||||||
RBAM_030610__ 1293 ACTCCAGCCGGGAGATACGCTTCCGATTTACATTCAGCACAACCAAAACT 1342
BSNT_04989___ 1352 TTAAGCTTCCGAAAGACCCTGAAACACCGATTATCATGGTGGGCCCTGGG 1401
|.|||||.|||.||.|.||.||.||||||||.||.|||||.||.||.|||
RBAM_030610__ 1343 TCAAGCTGCCGGAAAATCCGGATACACCGATCATTATGGTCGGGCCGGGG 1392
BSNT_04989___ 1402 ACAGGCGTCGCACCTTTCCGTTCCTTTATGCAGGAGCGTGAGGAGACGGG 1451
||||||.||||.||.||||||||||||||||||||||||||.||.||.||
RBAM_030610__ 1393 ACAGGCATCGCGCCGTTCCGTTCCTTTATGCAGGAGCGTGAAGAAACCGG 1442
BSNT_04989___ 1452 AGCGGAAGGAAAGGCATGGATGTTCTTTGGCGATCAGCGCTTTGTCACGG 1501
|||.|||||.||..|||||.||||.||.||.|||||||.|||||||||.|
RBAM_030610__ 1443 AGCTGAAGGGAAAACATGGCTGTTTTTCGGGGATCAGCACTTTGTCACTG 1492
BSNT_04989___ 1502 ATTTCCTTTACCAGACAGAGTGGCAGAATTGGCT-CAAAGACGGTGTGCT 1550
||||.||.||||||||.||.|||||.||.||||| |||| |||||||.||
RBAM_030610__ 1493 ATTTTCTGTACCAGACGGAATGGCAAAAATGGCTGCAAA-ACGGTGTTCT 1541
BSNT_04989___ 1551 GACAAAAATGGATGTGGCGTTCTCACGTGATACAGAAGAAAAAGTATATG 1600
.|||||||||||.||.||.||.||.||.|||.|.||.|||||||||||||
RBAM_030610__ 1542 CACAAAAATGGACGTCGCTTTTTCCCGGGATTCGGAGGAAAAAGTATATG 1591
BSNT_04989___ 1601 TGCAGCACCGCATGCTTGAACATAGCGCAGAATTGTTTGAATGGCTTCAA 1650
||||||||||||||...|||||.|||..|||..|.|.|||||||||.||.
RBAM_030610__ 1592 TGCAGCACCGCATGAAAGAACAAAGCAAAGAGCTTTATGAATGGCTGCAG 1641
BSNT_04989___ 1651 GAAGGAGCGGCTGTTTACATTTGCGGAGATGAAAAGCACATGGCGCATGA 1700
.|.|||||..|.||.|||||.|||||.||||||.||||.|||||||||||
RBAM_030610__ 1642 CAGGGAGCCTCCGTATACATCTGCGGTGATGAACAGCATATGGCGCATGA 1691
BSNT_04989___ 1701 CGTCCATAACACATTGCTTGAAATTATCGAAAAAGAAGGCAATATGAGCC 1750
|||.||..|..|..|.||.||.||.||..|..||||||||...|||||||
RBAM_030610__ 1692 CGTGCACCAGGCGCTTCTCGATATCATTCAGGAAGAAGGCGGCATGAGCC 1741
BSNT_04989___ 1751 GCGAAGAGGCGG-AGGCTTATCTTGCCGATATGCAGCAGCAAAAACGCTA 1799
|.|||.|.|||| |.|||| .||.||.||.|||||||||.||||||||||
RBAM_030610__ 1742 GTGAAAAAGCGGAAAGCTT-CCTGGCAGACATGCAGCAGAAAAAACGCTA 1790
BSNT_04989___ 1800 TCAGCGTGATGTATATTGA 1818
|||||||||.|||||||||
RBAM_030610__ 1791 TCAGCGTGACGTATATTGA 1809
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