Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_04978 and RBAM_030500

See DNA alignment / Visit BSNT_04978 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:31
# Commandline: needle
#    -asequence pep-align/BSNT_04978___yvgL.1.9828.seq
#    -bsequence pep-align/RBAM_030500___yvgL.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04978___yvgL-RBAM_030500___yvgL.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04978___yvgL-RBAM_030500___yvgL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04978___yvgL
# 2: RBAM_030500___yvgL
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 265
# Identity:     193/265 (72.8%)
# Similarity:   224/265 (84.5%)
# Gaps:           5/265 ( 1.9%)
# Score: 975.0
# 
#
#=======================================

BSNT_04978___      1 MFKKYSIFI--AALTAFLLAAGCSSNQSSTDSE-KKVTLTISAAASAEDA     47
                     |.||.:..:  ||:..||..|||||.|||...: :|||||:||||||:||
RBAM_030500__      1 MLKKKATLLTTAAMAVFLATAGCSSGQSSKGGQNEKVTLTVSAAASAQDA     50

BSNT_04978___     48 LEEIQKNYEKEHQNITIQDNYGSSGALQKQISQGAGADLFFSAAEDKFKK     97
                     |||||.||||.|.|:|||||:||||.||||||||||||||||||||||:|
RBAM_030500__     51 LEEIQTNYEKSHSNVTIQDNFGSSGTLQKQISQGAGADLFFSAAEDKFEK    100

BSNT_04978___     98 LVDDGDIAKKDSTDLVGNEIVLVVPKNGDSPVTSFSNLAE--SEKIALGT    145
                     ||.||||.|||||||:.|::|::||:...:.:|..::|.:  :|||||||
RBAM_030500__    101 LVHDGDIDKKDSTDLLKNDLVMIVPEKNSAHLTHLNDLKKDSAEKIALGT    150

BSNT_04978___    146 PESVPAGAYGKESLTKLSLWDKVKDKIVYGKDVRQVLSYVETGNVDAGIV    195
                     |||||||.|.|:|||.||||||||||:||.||||||||||||||||||:|
RBAM_030500__    151 PESVPAGQYAKQSLTTLSLWDKVKDKVVYAKDVRQVLSYVETGNVDAGLV    200

BSNT_04978___    196 YKTDALVSKKVNIIDEAKADTHSPIVYPLGIVKDTKHRKEAKEFYEYLQS    245
                     ||||||:||||.|.|||.|.||.|||||:||||||||||||:.||:||||
RBAM_030500__    201 YKTDALISKKVKITDEAPAKTHDPIVYPVGIVKDTKHRKEAEAFYQYLQS    250

BSNT_04978___    246 DEAMKVFEKYGFTAE    260
                     |||||||:||||||:
RBAM_030500__    251 DEAMKVFKKYGFTAK    265


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