Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04978 and RBAM_030500

See Amino acid alignment / Visit BSNT_04978 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:31
# Commandline: needle
#    -asequence dna-align/BSNT_04978___yvgL.1.9828.seq
#    -bsequence dna-align/RBAM_030500___yvgL.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04978___yvgL-RBAM_030500___yvgL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04978___yvgL-RBAM_030500___yvgL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04978___yvgL
# 2: RBAM_030500___yvgL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 836
# Identity:     579/836 (69.3%)
# Similarity:   579/836 (69.3%)
# Gaps:          91/836 (10.9%)
# Score: 1976.5
# 
#
#=======================================

BSNT_04978___      1 ATGTTTAAGAAGTATTCTATTTTCA----TCGCAGCCTTAACT-------     39
                     |||||.||.|||.|..|.|    ||    ||.|      ||||       
RBAM_030500__      1 ATGTTGAAAAAGAAAGCGA----CACTACTCAC------AACTGCGGCTA     40

BSNT_04978___     40 --GCCTTTCTCCTTGCA---GCAGGCTGTTCTT-----CAAACCAGTCTT     79
                       |||.||.||||.|||   ||.|||||.||.|     |||.|  |||  
RBAM_030500__     41 TGGCCGTTTTCCTGGCAACTGCGGGCTGCTCATCCGGACAATC--GTC--     86

BSNT_04978___     80 CAA---CGGACAGCGAGA--AAAAAGTAACGTTAACCATCTCAGCTGCCG    124
                     |||   ||||||   |.|  |||||||.|||.|.|||.|.||.||.||.|
RBAM_030500__     87 CAAAGGCGGACA---AAACGAAAAAGTCACGCTGACCGTTTCTGCGGCAG    133

BSNT_04978___    125 CCAGCGCGGAGGATGCACTTGAGGAAATCCAAAAAAATTATGAAAAAGAG    174
                     |||||||..|||||||||||||.||||||||.|..||.||.||||||...
RBAM_030500__    134 CCAGCGCTCAGGATGCACTTGAAGAAATCCAGACCAACTACGAAAAATCA    183

BSNT_04978___    175 CATCAAAATATTACCATCCAAGATAACTATGGCTCTTCCGGCGCCTTGCA    224
                     |||..|||..|.|||||.|||||.||||..||.||.||.|||.|.|||||
RBAM_030500__    184 CATTCAAACGTAACCATTCAAGACAACTTCGGATCATCAGGCACATTGCA    233

BSNT_04978___    225 AAAACAGATTTCTCAAGGAGCAGGAGCAGATCTGTTCTTCTCAGCTGCTG    274
                     ||||||.|||||.|||||.||.|||||.|||.|.||||||||.||.||.|
RBAM_030500__    234 AAAACAAATTTCACAAGGCGCGGGAGCTGATTTATTCTTCTCGGCAGCCG    283

BSNT_04978___    275 AGGATAAATTTAAAAAGCTGGTGGATGATGGAGATATCGCAAAAAAAGAC    324
                     |.||||||||..|||||||.||..||||.||||||||||..|||||.|||
RBAM_030500__    284 AAGATAAATTCGAAAAGCTCGTTCATGACGGAGATATCGACAAAAAGGAC    333

BSNT_04978___    325 AGCACTGATTTGGTCGGTAATGAAATTGTGCTGGTCGTACC---GAAAAA    371
                     |||||.|||.|..|....|||||..|.||..||.|||||||   ||||||
RBAM_030500__    334 AGCACGGATCTTTTGAAAAATGATCTCGTCATGATCGTACCTGAGAAAAA    383

BSNT_04978___    372 CGGAG-ATTCACCTGTGACAAGCTTCAGCAATCTG-----GCTGAA----    411
                     |.|.| |  ||||||..||           |||||     .|||||    
RBAM_030500__    384 CAGCGCA--CACCTGACAC-----------ATCTGAATGACCTGAAAAAA    420

BSNT_04978___    412 ------TCAGAAAAAATCGCCCTTGGCACTCCGGAATCCGTACCGGCAGG    455
                           .|.||||||||.||.||.|||||.||.||||||||.|||||.||
RBAM_030500__    421 GACAGCGCGGAAAAAATTGCGCTCGGCACGCCTGAATCCGTTCCGGCCGG    470

BSNT_04978___    456 AGCTTATGGGAAAGAATCACTGACAAAGCTGTCTTTATGGGACAAAGTGA    505
                     |...||.|..|||.|.|||.||||.|...|.||..|.||||||||.||.|
RBAM_030500__    471 ACAATACGCCAAACAGTCATTGACGACATTATCCCTGTGGGACAAGGTAA    520

BSNT_04978___    506 AGGATAAAATTGTGTATGGAAAAGACGTTCGCCAAGTTCTTTCTTATGTT    555
                     |.||||||.|.||.||||.|||||||||||||||.||.||||||||||||
RBAM_030500__    521 AAGATAAAGTCGTCTATGCAAAAGACGTTCGCCAGGTGCTTTCTTATGTT    570

BSNT_04978___    556 GAAACCGGCAATGTAGACGCAGGTATTGTTTATAAAACAGATGCCCTGGT    605
                     ||||||||.|||||.||.||.||..||||.|||||||||||.||.|||.|
RBAM_030500__    571 GAAACCGGAAATGTCGATGCCGGGCTTGTCTATAAAACAGACGCGCTGAT    620

BSNT_04978___    606 CTCGAAAAAGGTCAACATTATTGACGA------GGCAAAAGCAGATACAC    649
                     .|||||||||||.||.||.|..||.||      |||.|||      ||.|
RBAM_030500__    621 TTCGAAAAAGGTGAAAATCACCGATGAAGCGCCGGCGAAA------ACGC    664

BSNT_04978___    650 ACAGCCCAATTGTCTATCCGTTAGGAATCGTAAAAGATACAAAACACCGT    699
                     ||...||.||.||.|||||..|.||.|||||.||.||||||||.||||||
RBAM_030500__    665 ACGATCCGATCGTTTATCCTGTCGGCATCGTCAAGGATACAAAGCACCGT    714

BSNT_04978___    700 AAGGAAGC-GAAG-GAATTTTACGAATACCTGCAATCTGATGAAGCAATG    747
                     ||.||||| |||| |  |||||..|.||.|||||.||.||||||||||||
RBAM_030500__    715 AAAGAAGCAGAAGCG--TTTTATCAGTATCTGCAGTCAGATGAAGCAATG    762

BSNT_04978___    748 AAAGTATTTGAGAAATATGGCTTTACTGCCGAGTAG    783
                     |||||.|||.||||||||||.|||||||||.||||.
RBAM_030500__    763 AAAGTGTTTAAGAAATATGGATTTACTGCCAAGTAA    798


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04978 and RBAM_030500

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
