Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_04948 and RBAM_030350

See DNA alignment / Visit BSNT_04948 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:29
# Commandline: needle
#    -asequence pep-align/BSNT_04948.1.9828.seq
#    -bsequence pep-align/RBAM_030350___yvrH1.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04948-RBAM_030350___yvrH1.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04948-RBAM_030350___yvrH1.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04948
# 2: RBAM_030350___yvrH1
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 250
# Identity:     195/250 (78.0%)
# Similarity:   214/250 (85.6%)
# Gaps:          13/250 ( 5.2%)
# Score: 996.5
# 
#
#=======================================

BSNT_04948         1 MKKTVTERNIKVENASILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEE     50
                                :|||||||||||||||||:||||.||||.||..|.||||
RBAM_030350__      1 -----------MENASILIVDDEKAIVDMVKRVLVKEGYHNIKTAGSAEE     39

BSNT_04948        51 AIPVVKANKVDLIVLDVMMGGMSGFEACTLIREYSDAPIFFLTARSSDAD    100
                     ||..||....||:||||||.|||||||||.||.|:|||||||||||||||
RBAM_030350__     40 AIEFVKHETADLLVLDVMMEGMSGFEACTEIRNYTDAPIFFLTARSSDAD     89

BSNT_04948       101 KLSGFAVGADDYITKPFNPLELAARIRAHLKRTYQSKETSSNQTYTYDYF    150
                     ||||||:|||||||||||||||||||||.|||||:.:|.::.:||:|.:|
RBAM_030350__     90 KLSGFALGADDYITKPFNPLELAARIRATLKRTYKREEKTAVKTYSYSHF    139

BSNT_04948       151 TFSPQNAELIVGGEAVACSAQLLQLLQYFCEHPNVVLSKDQIYEKVWGYP    200
                     ::||||||||||||.|:||||||||||||||||:||||||||||||||||
RBAM_030350__    140 SYSPQNAELIVGGEPVSCSAQLLQLLQYFCEHPDVVLSKDQIYEKVWGYP    189

BSNT_04948       201 SYGDNNTVMVHIRKLREKIERDPSNPEYIVTVRGLGYRFIPN--PEGKRS    248
                     ||||||||||||||||||||:|||||.||||||||||||||:  .:|.||
RBAM_030350__    190 SYGDNNTVMVHIRKLREKIEKDPSNPSYIVTVRGLGYRFIPDQGEKGTRS    239


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