Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04948 and RBAM_030350
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:29
# Commandline: needle
# -asequence dna-align/BSNT_04948.1.9828.seq
# -bsequence dna-align/RBAM_030350___yvrH1.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04948-RBAM_030350___yvrH1.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04948-RBAM_030350___yvrH1.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04948
# 2: RBAM_030350___yvrH1
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 783
# Identity: 553/783 (70.6%)
# Similarity: 553/783 (70.6%)
# Gaps: 99/783 (12.6%)
# Score: 1999.0
#
#
#=======================================
BSNT_04948 1 ATGAAAAAAACAGTGACAGAAAGGAACATAAAAGTGGAAAATGCGTCAAT 50
|||||||||||||||||
RBAM_030350__ 1 ---------------------------------GTGGAAAATGCGTCAAT 17
BSNT_04948 51 TTTAATCGTAGACGATGAGAAAGCGATTGTGGACATGATCAAACGCGTTC 100
||||||.||||||||||||||.|||||.||.||.|||.||||||||||||
RBAM_030350__ 18 TTTAATTGTAGACGATGAGAAGGCGATCGTTGATATGGTCAAACGCGTTC 67
BSNT_04948 101 TCGAAAAAGAAGGTTATCGAAATAT--ACTGGATGCAGC---AAGCGCAG 145
|||..||||||||.||||..||.|| | || |||| ||||||.|
RBAM_030350__ 68 TCGTCAAAGAAGGCTATCACAACATTAA---GA--CAGCCGGAAGCGCTG 112
BSNT_04948 146 AAGAAGCGATTCCCG---TTGTGAAGGCCA--ATAAGGTTGACTTGATTG 190
|.|||||||| || ||||.|| .|| |.|..|..||..||.|.|
RBAM_030350__ 113 AGGAAGCGAT---CGAGTTTGTTAA--ACATGAAACCGCGGATCTGCTCG 157
BSNT_04948 191 TGCTGGATGTCATGATGGGCGGAATGTCCGGTTTTGAAGCCTGCACACTT 240
||||||||||.|||||||..||.|||||||||||||||||.|||||....
RBAM_030350__ 158 TGCTGGATGTGATGATGGAAGGCATGTCCGGTTTTGAAGCATGCACCGAA 207
BSNT_04948 241 ATCAGAGAGTATTCAGACGCTCCGATTTTTTTCCTGACGGCAAGATCATC 290
|||.|..|.|||.|.|||||||||||.|||||.|||||.||..|.||.||
RBAM_030350__ 208 ATCCGGAACTATACCGACGCTCCGATCTTTTTTCTGACCGCCCGTTCTTC 257
BSNT_04948 291 CGACGCGGACAAATTATCGGGCTTTGCGGTTGGAGCTGATGACTATATCA 340
.||.|||||.||..|.||.||.|||||..|.||||||||.||.|||||.|
RBAM_030350__ 258 TGATGCGGATAAGCTGTCAGGATTTGCATTGGGAGCTGACGATTATATAA 307
BSNT_04948 341 CAAAACCATTTAATCCGCTGGAATTAGCGGCGCGGATCAGAGCG-CATCT 389
||||.||.|||||||||||.|||||.|||||||||||||||||| |.| |
RBAM_030350__ 308 CAAAGCCGTTTAATCCGCTCGAATTGGCGGCGCGGATCAGAGCGACGT-T 356
BSNT_04948 390 CAAGCGTACATATCAATCG---AAAGAAA----CGAGTTCAAA------- 425
.|||.|.||.||| ||.|| |.||||| || || |||
RBAM_030350__ 357 AAAGAGAACCTAT-AAGCGCGAAGAGAAAACGGCG-GT--AAAGACGTAT 402
BSNT_04948 426 TCAAACCTACA--CATATGATTACTTTACTTTTTCTCCGCAAAATGCCGA 473
||| |||| ||| |||.|.|.|||.||||||||.|||||
RBAM_030350__ 403 TCA----TACAGCCAT--------TTTTCCTATTCACCGCAAAACGCCGA 440
BSNT_04948 474 GTTGATCGTAGGCGGGGAAGCCGTTGCCTGTTCAGCCCAGCTTCTGCA-- 521
|.|||||||.||.||.||..||||...|||.||.||.|||||||||||
RBAM_030350__ 441 GCTGATCGTCGGGGGCGAGCCCGTCAGCTGCTCCGCACAGCTTCTGCAAT 490
BSNT_04948 522 -GCTTTTGCAGTATTTTTGTGAACACCCTAACGTGGTGCTTTCCAAAGAT 570
|||| ||.|||||.||||||||||||.|.||||||||.||.||||||
RBAM_030350__ 491 TGCTT---CAATATTTCTGTGAACACCCTGATGTGGTGCTCTCAAAAGAT 537
BSNT_04948 571 CAAATATATGAAAAAGTATGGGGCTATCCTTCCTACGGTGACAACAACAC 620
||.||.|||||||||||||||||.|||||.||.|||||.|||||||||||
RBAM_030350__ 538 CAGATCTATGAAAAAGTATGGGGATATCCGTCTTACGGCGACAACAACAC 587
BSNT_04948 621 CGTCATGGTTCATATTCGCAAGCTTAGGGAGAAGATTGAGCGCGATCCGA 670
|||||||||.|||||.||||||||.||.||.||.|||||....||.||.|
RBAM_030350__ 588 CGTCATGGTGCATATCCGCAAGCTCAGAGAAAAAATTGAAAAAGACCCCA 637
BSNT_04948 671 GCAATCCGGAGTATATTGTAACCGTTCGAGGTCTCGGCTATCGTTTTATC 720
||||||||...|||||||||||.||.||.||.|||||.|||||.|||||.
RBAM_030350__ 638 GCAATCCGTCCTATATTGTAACGGTGCGTGGCCTCGGTTATCGGTTTATT 687
BSNT_04948 721 CCAAATCCTG------AAGGCAAGCGGTCATGA 747
||..|||..| ||||.|..||.||||||
RBAM_030350__ 688 CCCGATCAAGGAGAAAAAGGAACCCGCTCATGA 720
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