Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_04943 and RBAM_030320

See DNA alignment / Visit BSNT_04943 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:29
# Commandline: needle
#    -asequence pep-align/BSNT_04943___yvrD.1.9828.seq
#    -bsequence pep-align/RBAM_030320___yvrD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04943___yvrD-RBAM_030320___yvrD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04943___yvrD-RBAM_030320___yvrD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04943___yvrD
# 2: RBAM_030320___yvrD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 263
# Identity:     219/263 (83.3%)
# Similarity:   241/263 (91.6%)
# Gaps:           0/263 ( 0.0%)
# Score: 1111.0
# 
#
#=======================================

BSNT_04943___      1 MDLQLKDKLVLITGSTSGIGKAAAKSFLQEGAAVIVNGRKQETVNRTIEE     50
                     |:|||:.|||||||||||||||||||||.|||.||:||||:|||.||:||
RBAM_030320__      1 MELQLERKLVLITGSTSGIGKAAAKSFLAEGAEVIINGRKKETVERTVEE     50

BSNT_04943___     51 LSGYGTVHGAAADLSKTDEAAAFIEKVNEIGDIDILVNNLGFFEVKDFAD    100
                     ||.||||||.|||||:.|||...|::...||::||||||||||||||||:
RBAM_030320__     51 LSAYGTVHGIAADLSRQDEADDLIKRAGGIGEVDILVNNLGFFEVKDFAE    100

BSNT_04943___    101 VTDEEWNQYFEVNVMSAVRTSRHFLPKMLAKNSGRILNIASEAGVKPLPT    150
                     |:|:||.:|||||||||||..|.|||:||.:||||||||:||||||||..
RBAM_030320__    101 VSDDEWTRYFEVNVMSAVRLCRRFLPQMLERNSGRILNISSEAGVKPLAQ    150

BSNT_04943___    151 MIPYSMTKTALISLSRGMAEMTKGTNVTVNSVLPGPTWTEGVASYMEGAA    200
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_030320__    151 MIPYSMTKTALISLSRGMAEMTKGTNVTVNSVLPGPTWTEGVASYMEGAA    200

BSNT_04943___    201 KAAGQDTDTFIKDYFKVNEPTSLIQRYATAEEVANTIVFLASDAASAING    250
                     ||||:|||:|::|||||||||||||||||.||||||||||||.|||||||
RBAM_030320__    201 KAAGEDTDSFVRDYFKVNEPTSLIQRYATPEEVANTIVFLASSAASAING    250

BSNT_04943___    251 TAQRVEGGIIRSL    263
                     ||||||||||||:
RBAM_030320__    251 TAQRVEGGIIRSI    263


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