Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04943 and RBAM_030320

See Amino acid alignment / Visit BSNT_04943 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:29
# Commandline: needle
#    -asequence dna-align/BSNT_04943___yvrD.1.9828.seq
#    -bsequence dna-align/RBAM_030320___yvrD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04943___yvrD-RBAM_030320___yvrD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04943___yvrD-RBAM_030320___yvrD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04943___yvrD
# 2: RBAM_030320___yvrD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 812
# Identity:     594/812 (73.2%)
# Similarity:   594/812 (73.2%)
# Gaps:          40/812 ( 4.9%)
# Score: 2095.5
# 
#
#=======================================

BSNT_04943___      1 ATGGATTTACAGC-TAAAAGACAAACTCGTCTTAATCACCGGCTCGACGT     49
                     |||||.||||||| |.||.|| ||.|||||.||.||.||.||.||.||.|
RBAM_030320__      1 ATGGAATTACAGCTTGAACGA-AAGCTCGTGTTGATTACAGGATCAACCT     49

BSNT_04943___     50 CCGGTATCGGGAAAGCCGCCGCAAAAAGCTTTCT-GCAAGAGGGTGCGGC     98
                     |.||.|||||.|||||.||.||||||||||||.| || .||.||.||.|.
RBAM_030320__     50 CAGGCATCGGAAAAGCTGCGGCAAAAAGCTTTTTAGC-CGAAGGCGCCGA     98

BSNT_04943___     99 AGTCATTGTCAACGGACGCAAACAGGAGACTGTTAATCGCACGATTGAAG    148
                     .||.|||.|.||||||.|.|||.|.||.|||||..|.||.|||.||||||
RBAM_030320__     99 GGTGATTATAAACGGAAGAAAAAAAGAAACTGTGGAACGGACGGTTGAAG    148

BSNT_04943___    149 AGCTTTCTGGATATGGAACGGTGCACGGTGCTGCTGCCGATTT-----GT    193
                     |||||||.|..||.||||||||.|||||....|||||.|||||     ||
RBAM_030320__    149 AGCTTTCCGCTTACGGAACGGTTCACGGCATCGCTGCGGATTTATCGCGT    198

BSNT_04943___    194 CAAAAACAGATGAAGCAGCGGCTTTTA-TTGAAAAAGTAAA---------    233
                     ||     .|||||.||.|     .|.| ||||     ||||         
RBAM_030320__    199 CA-----GGATGAGGCGG-----ATGACTTGA-----TAAAGCGCGCCGG    233

BSNT_04943___    234 TGAAATCGGTGATATTGATATCCTTGTCAACAACCTTGGTTTCTTCGAGG    283
                     .|.||||||.||..|.|||||.||.|||||.||.||.|||||.||.||.|
RBAM_030320__    234 CGGAATCGGGGAAGTCGATATTCTCGTCAATAATCTCGGTTTTTTTGAAG    283

BSNT_04943___    284 TAAAAGACTTTGCCGATGTGACAGATGAAGAGTGGAATCAATATTTCGAA    333
                     ||||||||||.||.||.|||.|.|||||.||.||||.||..|||||.|||
RBAM_030320__    284 TAAAAGACTTCGCTGAGGTGTCTGATGACGAATGGACTCGGTATTTTGAA    333

BSNT_04943___    334 GTGAACGTGATGAGCGCCGTTCGGACAAGCCGTCACTTCCTTCCAAAAAT    383
                     |||||.||.|||||||||||.||.....||||.|..||.||.||..||||
RBAM_030320__    334 GTGAATGTTATGAGCGCCGTGCGCCTGTGCCGGCGTTTTCTGCCGCAAAT    383

BSNT_04943___    384 GCTTGCCAAAAACAGCGGCCGCATTTTAAATATTGCAAGTGAAGCAGGCG    433
                     |||.|..|.|||||||||.||.|||.|.||.||..|.||||||||.||.|
RBAM_030320__    384 GCTCGAGAGAAACAGCGGACGGATTCTGAACATCTCCAGTGAAGCCGGTG    433

BSNT_04943___    434 TCAAACCGC-TGC-CAACGATGATTCCATACTCAATGACAAAAACGGCGC    481
                     ||||||||| ||| |||  ||||||||.||.||||||||.|||||||||.
RBAM_030320__    434 TCAAACCGCTTGCGCAA--ATGATTCCGTATTCAATGACGAAAACGGCGT    481

BSNT_04943___    482 TGATCAGCCTTTCAAGAGGAATGGCTGAAATGACAAAAGGCACAAATGTG    531
                     |.||||||.|.||..|.||||||||.||||||||.||||||||||||||.
RBAM_030320__    482 TAATCAGCTTGTCCCGGGGAATGGCGGAAATGACGAAAGGCACAAATGTC    531

BSNT_04943___    532 ACGGTTAACTCAGTGCTCCCGGGACCTACTTGGACAGAGGGCGTGGCATC    581
                     |||||.|||||.|||||.||||||||.||.|||||.||.|||||.||.||
RBAM_030320__    532 ACGGTCAACTCCGTGCTGCCGGGACCGACATGGACCGAAGGCGTCGCTTC    581

BSNT_04943___    582 CTATATGGAAGGCGCCGCAAAAGCAGCCGGCCAGGATACAGATACATTTA    631
                     .||.||||||||.||||||||.||.|||||..|.||.|||||.|..||..
RBAM_030320__    582 TTACATGGAAGGAGCCGCAAAGGCTGCCGGAGAAGACACAGACAGCTTCG    631

BSNT_04943___    632 TCAAAGACTATTTCAAGGTCAATGAGCCAACCTCACTTATTCAGCGATAC    681
                     ||...||.|||||.||.||.|||||.||.||.|||.|.||||||||.||.
RBAM_030320__    632 TCCGGGATTATTTTAAAGTGAATGAACCGACATCATTGATTCAGCGCTAT    681

BSNT_04943___    682 GCGACAGCAGAAGAAGTCGCCAACACAATCGTATTCCTCGCGTC-TGACG    730
                     ||.||..|.||||||||||||||.||.||.|||||.|||||.|| |.| |
RBAM_030320__    682 GCAACCCCGGAAGAAGTCGCCAATACGATTGTATTTCTCGCTTCATCA-G    730

BSNT_04943___    731 CCGCATCCGCCATTAACGGCACGGCACAGCGTGTGGAAGGCGGCATTATC    780
                     |.||.||.||||||||.|||||.||||||||.||.|||||||||||.|||
RBAM_030320__    731 CGGCTTCTGCCATTAATGGCACCGCACAGCGGGTTGAAGGCGGCATCATC    780

BSNT_04943___    781 CGTTCTCTGTAG    792
                     ||.||..|.||.
RBAM_030320__    781 CGCTCCATTTAA    792


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