Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_04939 and RBAM_030300
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:28
# Commandline: needle
# -asequence pep-align/BSNT_04939___yvrB.1.9828.seq
# -bsequence pep-align/RBAM_030300___yvrB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_04939___yvrB-RBAM_030300___yvrB.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04939___yvrB-RBAM_030300___yvrB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04939___yvrB
# 2: RBAM_030300___yvrB
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 353
# Identity: 259/353 (73.4%)
# Similarity: 288/353 (81.6%)
# Gaps: 31/353 ( 8.8%)
# Score: 1294.5
#
#
#=======================================
BSNT_04939___ 1 --------------------------MSVILGISCGSLHIPIPAVFRVFW 24
:...||||.||||||:..||.:
RBAM_030300__ 1 MRKAFILKRLKSNRPLAYTVSLLFLAVCTALGISIGSLHIPLSDVFWI-- 48
BSNT_04939___ 25 HQGFGGSIGSDDPMYTNIMMNIRLPRVVLAALVGAALSIAGAAFQGLLKN 74
|.|.: .|.|||..||||||||||||||||||||||||||||||||||
RBAM_030300__ 49 --GIGRT-SSADPMNVNIMMNIRLPRVVLAALVGAALSIAGAAFQGLLKN 95
BSNT_04939___ 75 PLADPYTLGVSSGASVGAVVTLFLGLHLPVIGGFTLPVVSVAAALATMAA 124
|||||||||||||||.|||:|||.|:.:||||.|||||||:|||:|.|||
RBAM_030300__ 96 PLADPYTLGVSSGASAGAVITLFFGIQIPVIGRFTLPVVSIAAAIAVMAA 145
BSNT_04939___ 125 VLFFSRLVHASMSVSTLILTGVITNSFLGAFISLIIALTGDNLLPIVHWL 174
|||||||||||||||||||||:|.||||||.|||:|||||::|||||.||
RBAM_030300__ 146 VLFFSRLVHASMSVSTLILTGIIMNSFLGALISLVIALTGNDLLPIVRWL 195
BSNT_04939___ 175 LGSVSMRGWSYVILFLPFFLLGTILLIINGRELNVMTYGEDKAKLLGVSV 224
|||||||||.||.|||||||.||.||:|||:|||:|||||:||:|||||.
RBAM_030300__ 196 LGSVSMRGWGYVALFLPFFLAGTALLLINGKELNIMTYGEEKARLLGVST 245
BSNT_04939___ 225 QQRKMLILIAGSLLTGSAVAVSGTIGFVGLVIPHITRLLWGTDHRHLLPL 274
.:||.|::.|||||||.|||||||||||||||||:|||||||||||||||
RBAM_030300__ 246 GKRKWLMIAAGSLLTGGAVAVSGTIGFVGLVIPHVTRLLWGTDHRHLLPL 295
BSNT_04939___ 275 SALLGAGFLVLADLLSRTIIEPIELPIGIITSLAGAPVFALILIRQHRGG 324
|||.|||||:||||.|||:|||:||||||:|:|||||||||||:|||.||
RBAM_030300__ 296 SALTGAGFLILADLFSRTVIEPVELPIGIMTALAGAPVFALILLRQHHGG 345
BSNT_04939___ 325 RSL 327
:.|
RBAM_030300__ 346 KRL 348
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