Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04939 and RBAM_030300
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:28
# Commandline: needle
# -asequence dna-align/BSNT_04939___yvrB.1.9828.seq
# -bsequence dna-align/RBAM_030300___yvrB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04939___yvrB-RBAM_030300___yvrB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04939___yvrB-RBAM_030300___yvrB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04939___yvrB
# 2: RBAM_030300___yvrB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1080
# Identity: 738/1080 (68.3%)
# Similarity: 738/1080 (68.3%)
# Gaps: 129/1080 (11.9%)
# Score: 2602.5
#
#
#=======================================
BSNT_04939___ 0 -------------------------------------------------- 0
RBAM_030300__ 1 TTGCGGAAAGCGTTTATCCTGAAACGTTTAAAAAGTAACCGCCCGCTGGC 50
BSNT_04939___ 1 -------GTGAGC-----GTCATCTTA------------------GGAAT 20
||.||| || |.||| ||.||
RBAM_030300__ 51 CTACACGGTCAGCCTGCTGT--TTTTAGCCGTTTGTACGGCACTCGGCAT 98
BSNT_04939___ 21 TTCTTGCGGCAGCCTGCATATTCCTATTCCCGCTGTTTTTCGTGTCTTTT 70
|||...||||||.||||||||||||.|..|||..||| ||||
RBAM_030300__ 99 TTCAATCGGCAGTCTGCATATTCCTTTATCCGACGTT---------TTTT 139
BSNT_04939___ 71 GGCATCAAGGTTTCGGCGG---CTCTATCGGTTCTG-----ATGATCCGA 112
|| ||| ||..|||||.| .|| .|||| ||| |||| |
RBAM_030300__ 140 GG-ATC--GGGATCGGCCGGACATC-CTCGG--CTGACCCTATGA----A 179
BSNT_04939___ 113 TGTACACTAATATTATGATGAATATCAGACTGCCGAGAGTTGTGCTGGCC 162
|||| ||||||||||||||||||.|.|||||||||||.||.|||||.
RBAM_030300__ 180 TGTA----AATATTATGATGAATATCCGCCTGCCGAGAGTCGTTCTGGCT 225
BSNT_04939___ 163 GCCCTTGTGGGGGCGGCTCTTTCTATTGCAGGGGCCGCTTTTCAAGGATT 212
||||||||.||.||.||..|.||.|||||.||.||.||.|||||.|||.|
RBAM_030300__ 226 GCCCTTGTCGGAGCCGCGTTATCCATTGCGGGAGCGGCGTTTCAGGGACT 275
BSNT_04939___ 213 GTTGAAAAATCCGCTTGCTGATCCCTATACGCTAGGTGTGTCATCCGGTG 262
..|||||||||||||.||.||.||.|||||.||.||.||.||.||.||.|
RBAM_030300__ 276 TCTGAAAAATCCGCTCGCCGACCCTTATACACTCGGGGTATCTTCGGGAG 325
BSNT_04939___ 263 CTTCAGTCGGAGCTGTTGTGACTCTGTTCTTAGGTCTGCACCTTCCTGTC 312
|.||||..|||||.|||.|.||..||||.||.||..|.||..||||.|||
RBAM_030300__ 326 CCTCAGCGGGAGCCGTTATCACCTTGTTTTTCGGCATTCAGATTCCCGTC 375
BSNT_04939___ 313 ATCGGAGGGTTTACACTCCCGGTTGTGAGTGTAGCCGCGGCACTTGCCAC 362
|||||..||||.|||||.||||||||.||..|.|||||.||..||||...
RBAM_030300__ 376 ATCGGCCGGTTCACACTACCGGTTGTCAGCATCGCCGCAGCCATTGCGGT 425
BSNT_04939___ 363 GATGGCGGCGGTCCTTTTCTTCAGCCGCCTCGTTCATGCTTCGATGTCTG 412
.|||||||||||.||.||.||||||||||||||||||||.||||||||.|
RBAM_030300__ 426 CATGGCGGCGGTTCTGTTTTTCAGCCGCCTCGTTCATGCGTCGATGTCGG 475
BSNT_04939___ 413 TTTCCACCCTCATTTTGACCGGTGTCATCACCAACTCTTTTTTGGGCGCA 462
||||.||.|||||||||||.||..||||||..||.||||||.|.||.||.
RBAM_030300__ 476 TTTCGACGCTCATTTTGACAGGCATCATCATGAATTCTTTTCTCGGGGCT 525
BSNT_04939___ 463 TTTATTTCTCTTATCATCGCCTTGACAGGAGACAACCTGCTTCCGATTGT 512
.|.|||||.|||.|.|||||.||.||.||..|..|.|||||.||||||||
RBAM_030300__ 526 CTCATTTCGCTTGTGATCGCTTTAACGGGCAATGATCTGCTCCCGATTGT 575
BSNT_04939___ 513 GCATTGGCTGCTTGGCAGCGTCTCAATGAGGGGCTGGAGCTATGTTATTT 562
.|..||||||.|.||.|||||.|||||||||||||||.|||||||.....
RBAM_030300__ 576 CCGCTGGCTGTTAGGAAGCGTGTCAATGAGGGGCTGGGGCTATGTCGCGC 625
BSNT_04939___ 563 TGTTTCTCCCGTTTTTTCTTTTGGGAAC--CATTTTATTGATTATAAACG 610
|||||||.||.||||||||....||.|| |..|| .||.||||.||.|
RBAM_030300__ 626 TGTTTCTGCCTTTTTTTCTGGCCGGGACGGCGCTT--CTGCTTATCAATG 673
BSNT_04939___ 611 GAAGGGAACTGAACGTGATGACATATGGAGAAGATAAAGCAAAGCTTCTT 660
|.|..|||.|.|||.|.|||||.|||||||||||.||.||||.|||..|.
RBAM_030300__ 674 GCAAAGAATTAAACATTATGACTTATGGAGAAGAAAAGGCAAGGCTGTTA 723
BSNT_04939___ 661 GGAGTCAGTGTTCA---GCAGAGGAAGAT-GCTGATTTTAATAGCCGGAT 706
||.|||||| | |.|.|.|||.|| ||||||..|...||||||||
RBAM_030300__ 724 GGCGTCAGT----ACGGGAAAAAGAAAATGGCTGATGATCGCAGCCGGAT 769
BSNT_04939___ 707 CTCTTTTGACGGGAAGCGCTGTGGCAGTATCGGGTACGATTGGCTTTGTC 756
||||..||||||||.|.||.||.||.||.|||||.|||||.||.||||||
RBAM_030300__ 770 CTCTGCTGACGGGAGGAGCGGTTGCCGTCTCGGGGACGATCGGATTTGTC 819
BSNT_04939___ 757 GGCCTTGTGATTCCGCATATCACAAGGCTTTTGTGGGGAACGGACCATCG 806
||.|||||.|||||.||..|.|||.|||||||||||||.|||||.|||||
RBAM_030300__ 820 GGTCTTGTCATTCCCCACGTGACACGGCTTTTGTGGGGGACGGATCATCG 869
BSNT_04939___ 807 GCATTTACTGCCGCTGTCCGCCTTGCTCGGG-GCAGGGTTTCTCGTTTTA 855
.|||||||||||||||||.||.||| .|||| ||.|||||||||.||||.
RBAM_030300__ 870 CCATTTACTGCCGCTGTCAGCATTG-ACGGGCGCCGGGTTTCTCATTTTG 918
BSNT_04939___ 856 GCCGATCTGCTTTCCAGAACCATCATTGAGCCGATTGAACTGCCGATCGG 905
||.|||.||.|||||.|.|||.||||||||||..|.|||.||||||||||
RBAM_030300__ 919 GCGGATTTGTTTTCCCGCACCGTCATTGAGCCTGTCGAATTGCCGATCGG 968
BSNT_04939___ 906 GATCATTACGTCCTTGGCGGGAGCGCCTGTGTTCGCTCTT-ATTTTAATT 954
.||.||.|||.|.||||||||||||||||||||.|| ||| |||.|..||
RBAM_030300__ 969 CATTATGACGGCTTTGGCGGGAGCGCCTGTGTTTGC-CTTGATTCTGCTT 1017
BSNT_04939___ 955 CGGCAGCACCGCGGGGGGAGAAGCTTATGA 984
||.|||||.|..||.||||.|.||||||||
RBAM_030300__ 1018 CGCCAGCATCATGGAGGGAAACGCTTATGA 1047
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