Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04939 and RBAM_030300

See Amino acid alignment / Visit BSNT_04939 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:28
# Commandline: needle
#    -asequence dna-align/BSNT_04939___yvrB.1.9828.seq
#    -bsequence dna-align/RBAM_030300___yvrB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04939___yvrB-RBAM_030300___yvrB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04939___yvrB-RBAM_030300___yvrB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04939___yvrB
# 2: RBAM_030300___yvrB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1080
# Identity:     738/1080 (68.3%)
# Similarity:   738/1080 (68.3%)
# Gaps:         129/1080 (11.9%)
# Score: 2602.5
# 
#
#=======================================

BSNT_04939___      0 --------------------------------------------------      0
                                                                       
RBAM_030300__      1 TTGCGGAAAGCGTTTATCCTGAAACGTTTAAAAAGTAACCGCCCGCTGGC     50

BSNT_04939___      1 -------GTGAGC-----GTCATCTTA------------------GGAAT     20
                            ||.|||     ||  |.|||                  ||.||
RBAM_030300__     51 CTACACGGTCAGCCTGCTGT--TTTTAGCCGTTTGTACGGCACTCGGCAT     98

BSNT_04939___     21 TTCTTGCGGCAGCCTGCATATTCCTATTCCCGCTGTTTTTCGTGTCTTTT     70
                     |||...||||||.||||||||||||.|..|||..|||         ||||
RBAM_030300__     99 TTCAATCGGCAGTCTGCATATTCCTTTATCCGACGTT---------TTTT    139

BSNT_04939___     71 GGCATCAAGGTTTCGGCGG---CTCTATCGGTTCTG-----ATGATCCGA    112
                     || |||  ||..|||||.|   .|| .||||  |||     ||||    |
RBAM_030300__    140 GG-ATC--GGGATCGGCCGGACATC-CTCGG--CTGACCCTATGA----A    179

BSNT_04939___    113 TGTACACTAATATTATGATGAATATCAGACTGCCGAGAGTTGTGCTGGCC    162
                     ||||    ||||||||||||||||||.|.|||||||||||.||.|||||.
RBAM_030300__    180 TGTA----AATATTATGATGAATATCCGCCTGCCGAGAGTCGTTCTGGCT    225

BSNT_04939___    163 GCCCTTGTGGGGGCGGCTCTTTCTATTGCAGGGGCCGCTTTTCAAGGATT    212
                     ||||||||.||.||.||..|.||.|||||.||.||.||.|||||.|||.|
RBAM_030300__    226 GCCCTTGTCGGAGCCGCGTTATCCATTGCGGGAGCGGCGTTTCAGGGACT    275

BSNT_04939___    213 GTTGAAAAATCCGCTTGCTGATCCCTATACGCTAGGTGTGTCATCCGGTG    262
                     ..|||||||||||||.||.||.||.|||||.||.||.||.||.||.||.|
RBAM_030300__    276 TCTGAAAAATCCGCTCGCCGACCCTTATACACTCGGGGTATCTTCGGGAG    325

BSNT_04939___    263 CTTCAGTCGGAGCTGTTGTGACTCTGTTCTTAGGTCTGCACCTTCCTGTC    312
                     |.||||..|||||.|||.|.||..||||.||.||..|.||..||||.|||
RBAM_030300__    326 CCTCAGCGGGAGCCGTTATCACCTTGTTTTTCGGCATTCAGATTCCCGTC    375

BSNT_04939___    313 ATCGGAGGGTTTACACTCCCGGTTGTGAGTGTAGCCGCGGCACTTGCCAC    362
                     |||||..||||.|||||.||||||||.||..|.|||||.||..||||...
RBAM_030300__    376 ATCGGCCGGTTCACACTACCGGTTGTCAGCATCGCCGCAGCCATTGCGGT    425

BSNT_04939___    363 GATGGCGGCGGTCCTTTTCTTCAGCCGCCTCGTTCATGCTTCGATGTCTG    412
                     .|||||||||||.||.||.||||||||||||||||||||.||||||||.|
RBAM_030300__    426 CATGGCGGCGGTTCTGTTTTTCAGCCGCCTCGTTCATGCGTCGATGTCGG    475

BSNT_04939___    413 TTTCCACCCTCATTTTGACCGGTGTCATCACCAACTCTTTTTTGGGCGCA    462
                     ||||.||.|||||||||||.||..||||||..||.||||||.|.||.||.
RBAM_030300__    476 TTTCGACGCTCATTTTGACAGGCATCATCATGAATTCTTTTCTCGGGGCT    525

BSNT_04939___    463 TTTATTTCTCTTATCATCGCCTTGACAGGAGACAACCTGCTTCCGATTGT    512
                     .|.|||||.|||.|.|||||.||.||.||..|..|.|||||.||||||||
RBAM_030300__    526 CTCATTTCGCTTGTGATCGCTTTAACGGGCAATGATCTGCTCCCGATTGT    575

BSNT_04939___    513 GCATTGGCTGCTTGGCAGCGTCTCAATGAGGGGCTGGAGCTATGTTATTT    562
                     .|..||||||.|.||.|||||.|||||||||||||||.|||||||.....
RBAM_030300__    576 CCGCTGGCTGTTAGGAAGCGTGTCAATGAGGGGCTGGGGCTATGTCGCGC    625

BSNT_04939___    563 TGTTTCTCCCGTTTTTTCTTTTGGGAAC--CATTTTATTGATTATAAACG    610
                     |||||||.||.||||||||....||.||  |..||  .||.||||.||.|
RBAM_030300__    626 TGTTTCTGCCTTTTTTTCTGGCCGGGACGGCGCTT--CTGCTTATCAATG    673

BSNT_04939___    611 GAAGGGAACTGAACGTGATGACATATGGAGAAGATAAAGCAAAGCTTCTT    660
                     |.|..|||.|.|||.|.|||||.|||||||||||.||.||||.|||..|.
RBAM_030300__    674 GCAAAGAATTAAACATTATGACTTATGGAGAAGAAAAGGCAAGGCTGTTA    723

BSNT_04939___    661 GGAGTCAGTGTTCA---GCAGAGGAAGAT-GCTGATTTTAATAGCCGGAT    706
                     ||.||||||    |   |.|.|.|||.|| ||||||..|...||||||||
RBAM_030300__    724 GGCGTCAGT----ACGGGAAAAAGAAAATGGCTGATGATCGCAGCCGGAT    769

BSNT_04939___    707 CTCTTTTGACGGGAAGCGCTGTGGCAGTATCGGGTACGATTGGCTTTGTC    756
                     ||||..||||||||.|.||.||.||.||.|||||.|||||.||.||||||
RBAM_030300__    770 CTCTGCTGACGGGAGGAGCGGTTGCCGTCTCGGGGACGATCGGATTTGTC    819

BSNT_04939___    757 GGCCTTGTGATTCCGCATATCACAAGGCTTTTGTGGGGAACGGACCATCG    806
                     ||.|||||.|||||.||..|.|||.|||||||||||||.|||||.|||||
RBAM_030300__    820 GGTCTTGTCATTCCCCACGTGACACGGCTTTTGTGGGGGACGGATCATCG    869

BSNT_04939___    807 GCATTTACTGCCGCTGTCCGCCTTGCTCGGG-GCAGGGTTTCTCGTTTTA    855
                     .|||||||||||||||||.||.||| .|||| ||.|||||||||.||||.
RBAM_030300__    870 CCATTTACTGCCGCTGTCAGCATTG-ACGGGCGCCGGGTTTCTCATTTTG    918

BSNT_04939___    856 GCCGATCTGCTTTCCAGAACCATCATTGAGCCGATTGAACTGCCGATCGG    905
                     ||.|||.||.|||||.|.|||.||||||||||..|.|||.||||||||||
RBAM_030300__    919 GCGGATTTGTTTTCCCGCACCGTCATTGAGCCTGTCGAATTGCCGATCGG    968

BSNT_04939___    906 GATCATTACGTCCTTGGCGGGAGCGCCTGTGTTCGCTCTT-ATTTTAATT    954
                     .||.||.|||.|.||||||||||||||||||||.|| ||| |||.|..||
RBAM_030300__    969 CATTATGACGGCTTTGGCGGGAGCGCCTGTGTTTGC-CTTGATTCTGCTT   1017

BSNT_04939___    955 CGGCAGCACCGCGGGGGGAGAAGCTTATGA    984
                     ||.|||||.|..||.||||.|.||||||||
RBAM_030300__   1018 CGCCAGCATCATGGAGGGAAACGCTTATGA   1047


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