Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_04938 and RBAM_030290
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:28
# Commandline: needle
# -asequence pep-align/BSNT_04938___yvrA.1.9828.seq
# -bsequence pep-align/RBAM_030290___yvrA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_04938___yvrA-RBAM_030290___yvrA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04938___yvrA-RBAM_030290___yvrA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04938___yvrA
# 2: RBAM_030290___yvrA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 449
# Identity: 210/449 (46.8%)
# Similarity: 284/449 (63.3%)
# Gaps: 47/449 (10.5%)
# Score: 1032.0
#
#
#=======================================
BSNT_04938___ 1 MMKAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGT 50
|::...||||||...::.:||.|..||||:|||||||||||||:.||||.
RBAM_030290__ 1 MIRVSSLSGGYGGRMIVEDVSFTAGKGEFVGILGPNGSGKTTLMKLLTGM 50
BSNT_04938___ 51 LPAKEGRVYLAGKLLADYKPKELAQIMAVLPQKTDQAFTFTVEETVAFGR 100
|...:|...:||:.:..|||:|||:|||||||.|:|||||||:|||:|||
RBAM_030290__ 51 LSPSKGEALVAGRPVGGYKPRELAKIMAVLPQHTEQAFTFTVKETVSFGR 100
BSNT_04938___ 101 YPFQTGLFRQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLA 150
||:|.|||||..:.||.||:||||.||:..:||:.:|.|||||:|||:||
RBAM_030290__ 101 YPYQKGLFRQMDQHDEDIVREAMEMTGIDRYAQQSVRNLSGGERQRVFLA 150
BSNT_04938___ 151 QALAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLN 200
|||||||.:|.|||||.||||.|||||||.:||||||.||..:|:|||||
RBAM_030290__ 151 QALAQQPEVLCLDEPTTFLDLKYQKDLLDTVKRLTRERGLTVISIFHDLN 200
BSNT_04938___ 201 TASLYCDELMFMKNGTAGPKQKPEYAVTEQSIKAVYDTDVTALVHQSSPK 250
.|..|||:|:.||:|.|.|||.|:.|:.:::|:.:|...|:|:..|||||
RBAM_030290__ 201 AAGQYCDQLLMMKDGRAFPKQTPDQALKKETIEDIYGITVSAVAQQSSPK 250
BSNT_04938___ 251 PMIVIQPEKDSVKQQ-SIPFEALLQAGRDDILLQTEIPLRTLSSTPIGAG 299
|:|...||....::. ::||.:|:....:.:.|.||.|.|.||:...|.|
RBAM_030290__ 251 PLIAFMPEAQEEREPVNVPFASLINKSGNTVTLHTERPFRMLSTASDGPG 300
BSNT_04938___ 300 FSWSRTLIHKRLPDQPDPIEGLTACLSESGFQLQETCAMASSERLDHFVY 349
|||||.| |.......:.
RBAM_030290__ 301 FSWSRRL---------------------------------SGSAAAGLIC 317
BSNT_04938___ 350 RTYEDGELSVFICVQTGFSIWILINGYAADQFFIKALMAAEAERTKVLGD 399
||:: ||.|.|....::|:||:|..::|.|::.|.||...|.:.|..
RBAM_030290__ 318 RTFD----SVTIAVTAQHTVWVLISGRLSEQGFVRLLTAAAEARMQALSG 363
BSNT_04938___ 400 GRGTGDILIAATQTQQSENIEQRLNQLIKKGTAECIKEAAELFE----- 443
.:..|||:|.|.||.::.:: ....:.:::|||.|:| ||| |
RBAM_030290__ 364 RQAKGDIVICALQTGEAMDV-PHAERAVRRGTAACVK-AAE--EGGIQR 408
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