Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04938 and RBAM_030290
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:28
# Commandline: needle
# -asequence dna-align/BSNT_04938___yvrA.1.9828.seq
# -bsequence dna-align/RBAM_030290___yvrA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04938___yvrA-RBAM_030290___yvrA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04938___yvrA-RBAM_030290___yvrA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04938___yvrA
# 2: RBAM_030290___yvrA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1448
# Identity: 840/1448 (58.0%)
# Similarity: 840/1448 (58.0%)
# Gaps: 337/1448 (23.3%)
# Score: 2172.5
#
#
#=======================================
BSNT_04938___ 1 ATGATGAAGG-CAGAAGGGCTGTCGGGAGGATACGGCGACAGCCGCCTAA 49
|||||.|.|| .||.| |.|||||.||.||.|||||.| ||||..|.|
RBAM_030290__ 1 ATGATCAGGGTGAGCA-GCCTGTCCGGCGGGTACGGAG---GCCGGATGA 46
BSNT_04938___ 50 TT----AACAATGTCAGCTTAACCG-TGGAGAAGGGAGAATTTCTCGGAA 94
|| || .||||||||||.|||| .||| ||.||.||||||.||||.|
RBAM_030290__ 47 TTGTGGAA-GATGTCAGCTTTACCGCCGGA-AAAGGTGAATTTGTCGGCA 94
BSNT_04938___ 95 TTCTCGGCCCTAATGGAAGCGGAAAAACCACGCTTTTGCACTTGCTGACA 144
|.|||||.||.||.||....||||||||.|||||..||.|.||||||||.
RBAM_030290__ 95 TACTCGGTCCGAACGGCTCGGGAAAAACAACGCTGATGAAATTGCTGACG 144
BSNT_04938___ 145 GGTACGCT---GCCGGCCAAGGAAGGC-AGG-GTT--TATCTGGCTGGAA 187
||.|.||| .|||.|.| ||||| ||| |.| |..|.|||.||
RBAM_030290__ 145 GGAATGCTCTCTCCGTCAA---AAGGCGAGGCGCTCGTCGCAGGCAGG-- 189
BSNT_04938___ 188 AACTGCTGGCGGACTATAAACCGAAGGAACTGGCGCAAATCATGGCTGTC 237
.|||..|||||| ||.||.|||..|||.||.|||.||||||||||.||.
RBAM_030290__ 190 -CCTGTCGGCGGA-TACAAGCCGCGGGAGCTTGCGAAAATCATGGCCGTT 237
BSNT_04938___ 238 CTGCCGCAAAAAACGGATCAAGCCTTCACCTTTACCGTCGAAGAAACTGT 287
.|||||||..|.||.||.|||||.||.||.||||||||..|.|||||.||
RBAM_030290__ 238 TTGCCGCAGCATACAGAGCAAGCTTTTACATTTACCGTTAAGGAAACAGT 287
BSNT_04938___ 288 AGCCTTT-GGCAGATATCCATTCCAAACGGGACTGTTCAGACAGCAGACT 336
|.|||| ||||||||.||.|..||||..|||||.|||||||||..|..|
RBAM_030290__ 288 -GTCTTTCGGCAGATACCCGTATCAAAAAGGACTCTTCAGACAGATGGAT 336
BSNT_04938___ 337 GAAAAGGATGAAGCCATTGTACAGGAAGCAATGGAGCAA--ACAGG-AGT 383
.||.|.||.||||.||||||.|.||||||.||||| || ||.|| |..
RBAM_030290__ 337 CAACATGACGAAGACATTGTCCGGGAAGCGATGGA--AATGACGGGCATC 384
BSNT_04938___ 384 GGCCGATTTTGCGCA-AAAGCCGATTCGCGAACTAAGCGGAGGGGAACAG 432
|.|||| |.|||||| .||.||| |.|||.|.||.|||||.|||||.|.|
RBAM_030290__ 385 GACCGA-TATGCGCAGCAATCCG-TCCGCAATCTGAGCGGCGGGGAGCGG 432
BSNT_04938___ 433 CAGCGGGTGTATTTGGCACAAGCTTTGGCACAGCAGCC-GCGCATTTTAT 481
|||||.||.|.|.||||.||.||..||||.|||||||| |.| .|..|.|
RBAM_030290__ 433 CAGCGCGTCTTTCTGGCGCAGGCGCTGGCTCAGCAGCCTGAG-GTACTGT 481
BSNT_04938___ 482 TTTTGGACGAGCCGACTAATTTTCTCGATCTGGCTTATCAAAAAGACCTG 531
.|.||||.||||||||.|..|||||.|||||....|||||.|||||||||
RBAM_030290__ 482 GTCTGGATGAGCCGACGACCTTTCTTGATCTCAAATATCAGAAAGACCTG 531
BSNT_04938___ 532 CTTGATCTGATCAAACGCCTGACGAGAGAAAGCGGATTGGCGGCTGTCAG 581
||||||..|.|.||.||.||||||||||||||.||..||.|||...||||
RBAM_030290__ 532 CTTGATACGGTGAAGCGGCTGACGAGAGAAAGAGGCCTGACGGTCATCAG 581
BSNT_04938___ 582 CGTTTTTCATGATCTGAACACCGCAAGCCTGTACTGTGATGAGCTCATGT 631
..|||||||.||.||.|||.|||||.|||..||.||||||.|||||.||.
RBAM_030290__ 582 TATTTTTCACGACCTAAACGCCGCAGGCCAATATTGTGATCAGCTCCTGA 631
BSNT_04938___ 632 TTATGAAAAACGGTAC-CGCCGGGCCTAAGCAAAAACCGGAATATGCTGT 680
|.||||||.|||| || |||....||.|||||.|..|||||..|.|||.|
RBAM_030290__ 632 TGATGAAAGACGG-ACGCGCTTTTCCGAAGCAGACGCCGGATCAGGCTTT 680
BSNT_04938___ 681 CACAGAACAAAGCATAAAGGCGGTGTACGA----TACAG-AT----GTCA 721
|||.|||| ||.||.|..|.|| |||.| || ||||
RBAM_030290__ 681 ----GAAAAAAG-----AGACGATTGAAGACATTTACGGCATCACCGTCA 721
BSNT_04938___ 722 CCGCCTTGGTACATCAAAGCTCACCTAAACCGATGATTGTGATTCA-GCC 770
.|||..|.|..||.|||...||.||.||||||.||||.|.| |||| |||
RBAM_030290__ 722 GCGCTGTTGCCCAGCAATCGTCGCCGAAACCGCTGATCGCG-TTCATGCC 770
BSNT_04938___ 771 TGAA----------AAAGATAGCGTGAAGCAGCAGTCTA--TCCCATTTG 808
.||| |||||.||| |.|||.| |.||.||.|
RBAM_030290__ 771 GGAAGCGCAGGAGGAAAGAGAGC---------CTGTCAACGTTCCGTTCG 811
BSNT_04938___ 809 ----------AAGCATTGCTCCAAGCGG----GGCGTGATGACATTCTTC 844
||.|| .|||||| ..|||.|.| ||||
RBAM_030290__ 812 CCTCTCTGATAAACA------AAAGCGGAAATACCGTAACG-----CTTC 850
BSNT_04938___ 845 -TGCA-AACGGAAATCCCGCTTC-GAACATTGTCCTCCACGCCTATCGGT 891
|.|| ||||| ||| ||| |||..|||||..||.|..||..|||.
RBAM_030290__ 851 ATACAGAACGG-----CCG-TTCAGAATGTTGTCAACCGCATCTGACGGC 894
BSNT_04938___ 892 GCAGGGTTTTCGTGGAGCAGGACGCTGATCCATAAACGGCTGCCAGATCA 941
.|.||.|||||||||||| ||| |||||
RBAM_030290__ 895 CCGGGCTTTTCGTGGAGC----CGC-----------CGGCT--------- 920
BSNT_04938___ 942 GCCAGATCCGATAGAAGGACTTACGGC----CTGTCTTTCAGAAAGCGGT 987
||.|||| |||.| ||.|.
RBAM_030290__ 921 --------------------TTCCGGCTCAGCTGCC---------GCTGG 941
BSNT_04938___ 988 TTTCAACTGCAGGAGACGTGTGCGAT--GGCTTCTTCAGAAAGACTTGAC 1035
|||.|.||||.| .||||.| ||| || |||.|| |||
RBAM_030290__ 942 TTTGATCTGCCG--TACGTTT--GATTCGG-----TCACAA----TTG-- 976
BSNT_04938___ 1036 CATTTCGTGTAT-CG-AACATATGAAGACGGAGAGTTATCCGTTTTCATA 1083
.||||..| || |.|||| |||||
RBAM_030290__ 977 ----CCGTGACTGCGCAGCATA-----------------CCGTT------ 999
BSNT_04938___ 1084 TGCGTTCAGACCGGC------TTTTCG--ATTTGGATTT-------TGAT 1118
||.||.|.||.|.|| ||.||| |...|||||| || |
RBAM_030290__ 1000 TGGGTGCTGATCAGCGGACGTTTATCGGAACAGGGATTTGTACGGCTG-T 1048
BSNT_04938___ 1119 TAACGGCTATGCGGC-------AGATCAATTCTTCATCAAGGCTCTTAT- 1160
||||||| .||||| ||| ||..|||||||| |
RBAM_030290__ 1049 TAACGGC--AGCGGCTGAAGCGAGA----------ATGCAGGCTCTT-TC 1085
BSNT_04938___ 1161 -GGCTGCCGAAGCAGAACGGACGAAAGTG----------CTGGGAGACGG 1199
|||.|.| |.|||.|| |.|||.|.|| ||.|.||||.|
RBAM_030290__ 1086 CGGCAGAC-AGGCAAAA--GGCGACATTGTCATTTGTGCCTTGCAGACAG 1132
BSNT_04938___ 1200 AAGAGGCACAGGTGAT-----ATTCTCATCGCCGCGACTCAAACTCAGCA 1244
.|||||| ||| ...|||| ||||
RBAM_030290__ 1133 GAGAGGC------GATGGACGTCCCTCA----CGCG-------------- 1158
BSNT_04938___ 1245 ATCCGAAAACATAGAACAGCGGCTGAACCAATTGATAAAGAA-AGGGACA 1293
||| |||.| ||.| |||| |||.||.
RBAM_030290__ 1159 ----GAA-----AGAGC--CGTC---------------AGAAGAGGAACC 1182
BSNT_04938___ 1294 GCTGAATGTATAAAAGAGGCTGCTG-AGTTGTTTGAATAA-------- 1332
||.|.||||.||||||.|||.|..| ||..| |||||.
RBAM_030290__ 1183 GCGGCATGTGTAAAAGCGGCGGAAGAAGGAG---GAATACAACGATGA 1227
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