Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_04927 and RBAM_030230

See DNA alignment / Visit BSNT_04927 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:28
# Commandline: needle
#    -asequence pep-align/BSNT_04927___yvqF.1.9828.seq
#    -bsequence pep-align/RBAM_030230___yvqF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04927___yvqF-RBAM_030230___yvqF.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04927___yvqF-RBAM_030230___yvqF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04927___yvqF
# 2: RBAM_030230___yvqF
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 243
# Identity:     177/243 (72.8%)
# Similarity:   210/243 (86.4%)
# Gaps:           2/243 ( 0.8%)
# Score: 944.5
# 
#
#=======================================

BSNT_04927___      1 MTKKQLLGLIIALFGISMFLQIIGIGDLLFWPLFFLIAGYFLKKYSRDWL     50
                     |.|||:|||||||.|:||||:||||||.|||||||||.||...||||.||
RBAM_030230__      1 MAKKQILGLIIALLGVSMFLRIIGIGDFLFWPLFFLITGYIFNKYSRGWL     50

BSNT_04927___     51 GSVMYIFAAFLFLKNLFSITFNLFGYAFAAFLIYAGYRLIKGKPIFEPNE    100
                     |||:|||||||||:||||.||||||||||||||||||||:|||.:.|..|
RBAM_030230__     51 GSVLYIFAAFLFLRNLFSATFNLFGYAFAAFLIYAGYRLLKGKRVHEHKE    100

BSNT_04927___    101 KQVNLNKKEHHDP--PKDVKHPDMRSFFIGELQMMKQPFDLNDLNVSGFI    148
                     |::||.|:|...|  ..:.:.||:||||||||:|||.||:||||||||||
RBAM_030230__    101 KKINLEKEEQPKPSAQTESRQPDLRSFFIGELRMMKDPFELNDLNVSGFI    150

BSNT_04927___    149 GDIKIDLSKAMIPEGESTIVISGVIGNVDIYVPSDLEVAVSSAVFIGDIN    198
                     ||:|||||||||||||||:.|||||||||:|||.|:||:|||:.||||:|
RBAM_030230__    151 GDVKIDLSKAMIPEGESTMTISGVIGNVDVYVPPDIEVSVSSSAFIGDMN    200

BSNT_04927___    199 LIGSKKSGLSTKVYAASTDFSESKRRVKVSVSLFIGDVDVKYV    241
                     |:||||||:|..:|..|:::.:|.||:|:|:|||||||||||:
RBAM_030230__    201 LLGSKKSGMSPNLYKVSSEYGDSPRRIKISISLFIGDVDVKYL    243


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.