Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04927 and RBAM_030230
See
Amino acid alignment /
Visit
BSNT_04927 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:28
# Commandline: needle
# -asequence dna-align/BSNT_04927___yvqF.1.9828.seq
# -bsequence dna-align/RBAM_030230___yvqF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04927___yvqF-RBAM_030230___yvqF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04927___yvqF-RBAM_030230___yvqF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04927___yvqF
# 2: RBAM_030230___yvqF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 751
# Identity: 566/751 (75.4%)
# Similarity: 566/751 (75.4%)
# Gaps: 44/751 ( 5.9%)
# Score: 2130.0
#
#
#=======================================
BSNT_04927___ 1 ATGACAAAAAAACAGCTTCTCGGATTGATCATTGCTTTATTCGGCATCAG 50
|||.|||||||||||.||||||||.|.|||||.||.|||||.|||.||||
RBAM_030230__ 1 ATGGCAAAAAAACAGATTCTCGGACTTATCATCGCCTTATTAGGCGTCAG 50
BSNT_04927___ 51 TATGTTTTTGCAAATTATCGGAATAGGCGA--TCTGCTGTTTTGGCCGCT 98
.||||||||||..||||||||.||.||||| ||| |||||||||||||
RBAM_030230__ 51 CATGTTTTTGCGTATTATCGGCATCGGCGACTTCT--TGTTTTGGCCGCT 98
BSNT_04927___ 99 CTTTTTTCTGATTGCCGGCTATTTCCTTAAAAAATATTCCCGTGATTGGC 148
|||||||||||||.|.||.|||.|..||||.|||||||||||.|..||||
RBAM_030230__ 99 CTTTTTTCTGATTACAGGTTATATTTTTAATAAATATTCCCGCGGCTGGC 148
BSNT_04927___ 149 TTGGCTCCGTCATGTATATCTTTGCCGCGTTTCTATTTTTGAAAAACCTC 198
|.|||||||||.||||||||||.|||||.|||.|||||||||..|||||.
RBAM_030230__ 149 TCGGCTCCGTCCTGTATATCTTCGCCGCTTTTTTATTTTTGAGGAACCTG 198
BSNT_04927___ 199 TTCAGCATCACCTTTAATTTATTCGGCTATGCGTTTGCCGCATTTCTAAT 248
||||||..|||||||||..|.|||||||||||.||.|||||.|||||.||
RBAM_030230__ 199 TTCAGCGCCACCTTTAACCTGTTCGGCTATGCCTTCGCCGCCTTTCTCAT 248
BSNT_04927___ 249 TTACGCCGGCTACAGGCTTATCAAAGGGAAGC-CGATATTTGAACCGAAT 297
.|||||.|||||||||||..|.|||||.|||| || |...|||||..||.
RBAM_030230__ 249 CTACGCGGGCTACAGGCTCCTGAAAGGAAAGCGCG-TGCATGAACATAAA 297
BSNT_04927___ 298 GAGAAACAGGTCAATCTCAATAAAAAAGAACATCATGATCCGCCAAA--- 344
|||||..|..||||||| |.|||||||| ||.|.||||||
RBAM_030230__ 298 GAGAAGAAAATCAATCT---TGAAAAAGAA------GAGCAGCCAAAGCC 338
BSNT_04927___ 345 --------AGATGTAAA----ACATCCCGACATGCGCAGCTTTTTTATCG 382
|||.|.||| |||.||.|||.|.||||||||||||||||
RBAM_030230__ 339 TTCCGCCCAGACGGAAAGCAGACAGCCGGACCTCCGCAGCTTTTTTATCG 388
BSNT_04927___ 383 GTGAGCTGCAAATGATGAAGCAGCCGTTTGATCTGAATGATTTAAATGTT 432
|.|||||.|..|||||||||.|.||||||||.||||||||||||||||||
RBAM_030230__ 389 GCGAGCTCCGGATGATGAAGGACCCGTTTGAGCTGAATGATTTAAATGTT 438
BSNT_04927___ 433 TCTGGTTTTATCGGTGATATCAAAATCGATTTGTCTAAAGCGATGATTCC 482
||.||.||.|||||.|||.|.|||||.||||||||.||||||||||||||
RBAM_030230__ 439 TCCGGATTCATCGGCGATGTGAAAATTGATTTGTCAAAAGCGATGATTCC 488
BSNT_04927___ 483 CGAGGGAGAAAGCACAATCGTCATTAGCGGAGTCATTGGAAACGTTGATA 532
|||.|||||||||||.||...|||.|||||.|||||.||.||.||.|||.
RBAM_030230__ 489 CGAAGGAGAAAGCACGATGACCATCAGCGGTGTCATCGGCAATGTCGATG 538
BSNT_04927___ 533 TTTATGTACCATCGGACCTTGAAGTAGCTGTCAGCTCGGCTGTTTTTATA 582
|.||.||.||..||||..|.|||||..|.|||||.||..|.|.||||||.
RBAM_030230__ 539 TGTACGTCCCGCCGGATATCGAAGTGTCCGTCAGTTCATCGGCTTTTATC 588
BSNT_04927___ 583 GGAGACATCAATCTGATCGGCTCGAAGAAAAGCGGATTAAGCACGAA--G 630
||.||.||.||.|||.|||||||.|||||||||||..|.|||.|||| .
RBAM_030230__ 589 GGCGATATGAACCTGCTCGGCTCTAAGAAAAGCGGCATGAGCCCGAATCT 638
BSNT_04927___ 631 GTA-----TATGCCGCGTCAACCGATTTTAGCGAGTCAAAGCGCCGGGTC 675
||| ||| ||| |.||.|...||||.||...|||.|||.|.
RBAM_030230__ 639 GTATAAAGTAT----CGT---CTGAGTACGGCGACTCGCCGCGGCGGATT 681
BSNT_04927___ 676 AAAGTGTCCGTTTCCTTATTTATCGGTGATGTGGATGTGAAGTACGTATG 725
|||.|.||..||||.|||||.|||||.|||||||||||||||||..||||
RBAM_030230__ 682 AAAATTTCAATTTCGTTATTCATCGGCGATGTGGATGTGAAGTATTTATG 731
BSNT_04927___ 726 A 726
|
RBAM_030230__ 732 A 732
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.