Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_04858 and RBAM_029840

See DNA alignment / Visit BSNT_04858 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:23
# Commandline: needle
#    -asequence pep-align/BSNT_04858___yusD.1.9828.seq
#    -bsequence pep-align/RBAM_029840___yusD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04858___yusD-RBAM_029840___yusD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04858___yusD-RBAM_029840___yusD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04858___yusD
# 2: RBAM_029840___yusD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 116
# Identity:      93/116 (80.2%)
# Similarity:    99/116 (85.3%)
# Gaps:           2/116 ( 1.7%)
# Score: 449.0
# 
#
#=======================================

BSNT_04858___      1 MEKAEVLEDEYQHLFLKPLLNASTLLITFQGEAEALTVSINEQGEMKKVS     50
                     |||.||.|::.|||||||||||||||||||||.||||||||.||||:|.|
RBAM_029840__      1 MEKIEVSENDGQHLFLKPLLNASTLLITFQGETEALTVSINGQGEMRKTS     50

BSNT_04858___     51 -PPQTSNLTFYGNQTEIIDLLHGDISLQHLIQSGSLKVKGSFRALLKLEA     99
                      ..:.|||||||||||||.|||||:|||.|||||.|||||||||||||||
RBAM_029840__     51 VSKEKSNLTFYGNQTEIIHLLHGDVSLQKLIQSGKLKVKGSFRALLKLEA    100

BSNT_04858___    100 ILWLTNGFFQRVLKN-    114
                     ||||||||||.:.|. 
RBAM_029840__    101 ILWLTNGFFQAISKRP    116


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