Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04858 and RBAM_029840
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:23
# Commandline: needle
# -asequence dna-align/BSNT_04858___yusD.1.9828.seq
# -bsequence dna-align/RBAM_029840___yusD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04858___yusD-RBAM_029840___yusD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04858___yusD-RBAM_029840___yusD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04858___yusD
# 2: RBAM_029840___yusD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 372
# Identity: 269/372 (72.3%)
# Similarity: 269/372 (72.3%)
# Gaps: 48/372 (12.9%)
# Score: 1008.5
#
#
#=======================================
BSNT_04858___ 1 ATGGAGAAAGCGGAAGTTTTAGAAGATGA-GTATCAGCATCTGTTTTTAA 49
.||||||||...|||||||.|||..|||| |.| ||||||||||||||.|
RBAM_029840__ 1 GTGGAGAAAATAGAAGTTTCAGAGAATGACGGA-CAGCATCTGTTTTTGA 49
BSNT_04858___ 50 AACCCCTTTTGAATGCCTCAACATTGCTCATTACCTTCCAAGGAGAAGCA 99
||||.||.||.||.||||||||..||||.|||||.||||||||||||.||
RBAM_029840__ 50 AACCGCTATTAAACGCCTCAACGCTGCTGATTACATTCCAAGGAGAAACA 99
BSNT_04858___ 100 GAAGCCTTAACCGTCTCAATAAACGAACAGGGAGAAATGAAAAAA----- 144
|||||||||||.||||||||.||||.||||||||||||||.||||
RBAM_029840__ 100 GAAGCCTTAACGGTCTCAATTAACGGACAGGGAGAAATGAGAAAAACGTC 149
BSNT_04858___ 145 -GTTTCTCCGCCCCAAACG-----TCCAACCTGACCTTTTACGGAAACCA 188
|||| ||||.| ||.||..|||||||||||||||||||
RBAM_029840__ 150 GGTTT--------CAAAGGAAAAATCTAATTTGACCTTTTACGGAAACCA 191
BSNT_04858___ 189 AACGGAAATTATTGATTTATTGCACGGAGACATTTCCCTT--CAGCACCT 236
.||||||||.||..||.|..||||.||.| ||.||.||| ||..|.||
RBAM_029840__ 192 GACGGAAATCATCCATCTCCTGCATGGTG--ATGTCTCTTTGCAAAAGCT 239
BSNT_04858___ 237 GATTCAGAGCGGAAGCCTCAAAGTAAAGGGGTCATTCAGGGCCCTGTTAA 286
.||.||.|||||||..||||||||.||.||.||||||||.||.|||.|.|
RBAM_029840__ 240 TATCCAAAGCGGAAAACTCAAAGTGAAAGGATCATTCAGAGCTCTGCTGA 289
BSNT_04858___ 287 AGCTGGAAGCCATTCTCTGGCTGACAAATGGATTTTTTCAG------AGG 330
|||||||.|||||.||||||||||||||.|||||||||||| ||
RBAM_029840__ 290 AGCTGGAGGCCATCCTCTGGCTGACAAACGGATTTTTTCAGGCGATCAG- 338
BSNT_04858___ 331 GTTTTAAA-------AAATTAA 345
|||| ||
RBAM_029840__ 339 ----TAAACGGCCGTAA----- 351
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