Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_04824 and RBAM_029620

See DNA alignment / Visit BSNT_04824 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:21
# Commandline: needle
#    -asequence pep-align/BSNT_04824___frlR.1.9828.seq
#    -bsequence pep-align/RBAM_029620___yurK.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04824___frlR-RBAM_029620___yurK.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04824___frlR-RBAM_029620___yurK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04824___frlR
# 2: RBAM_029620___yurK
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 242
# Identity:     200/242 (82.6%)
# Similarity:   217/242 (89.7%)
# Gaps:           0/242 ( 0.0%)
# Score: 1041.0
# 
#
#=======================================

BSNT_04824___      1 MLNNGSSTPLYIQLKQIITDDIKKGVYSPTAKLPTENELCTKYNVSRITV     50
                     |||||||.||||||||||.||||||||||:.|||||||||..||||||||
RBAM_029620__      1 MLNNGSSKPLYIQLKQIIADDIKKGVYSPSVKLPTENELCETYNVSRITV     50

BSNT_04824___     51 RKAILDLVEEGYLIRQQGKGTFVKSPKLKRELIAVNGYSEFMESTGKKPK    100
                     |||||||||||:|:||||||||||||||||||||||||||||||||||||
RBAM_029620__     51 RKAILDLVEEGWLVRQQGKGTFVKSPKLKRELIAVNGYSEFMESTGKKPK    100

BSNT_04824___    101 HHVLSHDIIPASKPIAEKLQIHPESPVVELKRILYNDDQPLTFEVTHYPL    150
                     |.:|||:||.|.|.||:||::..||||:||||||::|||||:||:.||||
RBAM_029620__    101 HQILSHEIIEAPKSIAQKLRVASESPVLELKRILFHDDQPLSFEIAHYPL    150

BSNT_04824___    151 DLFPGIDTFIADGVSMHDILKQQYKVVPTHNTKLLNVVYAQQEESKYLDC    200
                     .|||.|...|..||||||||||.|:|||||||||||||||:||||:||.|
RBAM_029620__    151 SLFPDIGKHIKGGVSMHDILKQHYQVVPTHNTKLLNVVYAKQEESRYLAC    200

BSNT_04824___    201 DIGDALFEIDKTAFTSNDQPIYCSLFLMHTNRVTFTINSPYT    242
                     ||||||||||||||.|.|||||.|||||||:||||||||||.
RBAM_029620__    201 DIGDALFEIDKTAFMSKDQPIYSSLFLMHTDRVTFTINSPYA    242


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