Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_04783 and RBAM_029430

See DNA alignment / Visit BSNT_04783 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:19
# Commandline: needle
#    -asequence pep-align/BSNT_04783___lipA.1.9828.seq
#    -bsequence pep-align/RBAM_029430___lipA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04783___lipA-RBAM_029430___lipA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04783___lipA-RBAM_029430___lipA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04783___lipA
# 2: RBAM_029430___lipA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 298
# Identity:     296/298 (99.3%)
# Similarity:   298/298 (100.0%)
# Gaps:           0/298 ( 0.0%)
# Score: 1546.0
# 
#
#=======================================

BSNT_04783___      1 MAKKDEHLRKPEWLKIKLNTNENYTGLKKLMRENNLHTVCEEAKCPNIHE     50
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_029430__      1 MAKKDEHLRKPEWLKIKLNTNENYTGLKKLMRENNLHTVCEEAKCPNIHE     50

BSNT_04783___     51 CWAVRRTATFMILGSVCTRACRFCAVKTGLPTELDLQEPERVADSVALMN    100
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_029430__     51 CWAVRRTATFMILGSVCTRACRFCAVKTGLPTELDLQEPERVADSVALMN    100

BSNT_04783___    101 LKHAVITAVARDDQKDGGAGIFAETVRAIRRKSPFTTIEVLPSDMGGNYD    150
                     ||||||||||||||||||||:|||||||||||||||||||||||||||||
RBAM_029430__    101 LKHAVITAVARDDQKDGGAGVFAETVRAIRRKSPFTTIEVLPSDMGGNYD    150

BSNT_04783___    151 NLKTLMDTRPDILNHNIETVRRLTPRVRARATYDRSLEFLRRAKEMQPDI    200
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_029430__    151 NLKTLMDTRPDILNHNIETVRRLTPRVRARATYDRSLEFLRRAKEMQPDI    200

BSNT_04783___    201 PTKSSIMIGLGETKEEIIEVMDDLLANNVDIMAIGQYLQPTKKHLKVQKY    250
                     ||||||||||||||||||||||||||||||||||||||||:|||||||||
RBAM_029430__    201 PTKSSIMIGLGETKEEIIEVMDDLLANNVDIMAIGQYLQPSKKHLKVQKY    250

BSNT_04783___    251 YHPDEFAELKEIAMQKGFSHCEAGPLVRSSYHADEQVNEASKKRQAQA    298
                     ||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_029430__    251 YHPDEFAELKEIAMQKGFSHCEAGPLVRSSYHADEQVNEASKKRQAQA    298


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.