Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_04728 and RBAM_029180

See DNA alignment / Visit BSNT_04728 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:17
# Commandline: needle
#    -asequence pep-align/BSNT_04728___guaC.1.9828.seq
#    -bsequence pep-align/RBAM_029180___guaC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04728___guaC-RBAM_029180___guaC.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04728___guaC-RBAM_029180___guaC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04728___guaC
# 2: RBAM_029180___guaC
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 326
# Identity:     282/326 (86.5%)
# Similarity:   306/326 (93.9%)
# Gaps:           0/326 ( 0.0%)
# Score: 1498.0
# 
#
#=======================================

BSNT_04728___      1 MENVFDYEDIQLIPAKCIVNSRSECDTSVRLGGRTFKLPVVPANMQTIID     50
                     |||||||||||||||||||:|||||||||.|||.||||||||||||||||
RBAM_029180__      1 MENVFDYEDIQLIPAKCIVDSRSECDTSVTLGGHTFKLPVVPANMQTIID     50

BSNT_04728___     51 EKLAISLAENGYFYVMHRFEPEKRIDFIKDMNARGLFSSISVGVKDEEYE    100
                     |.:|..||||||||:|||||||||:.|::||.||||.||||||||:.:||
RBAM_029180__     51 ENIAAWLAENGYFYIMHRFEPEKRLAFVQDMKARGLISSISVGVKENDYE    100

BSNT_04728___    101 FVRQLAEENLTPEYVTIDIAHGHSNAVIEMIQHLKKHLPDSFVIAGNVGT    150
                     |:|:|..:.|.|:|:|||||||||||||.|||.:|:|:|:||||||||||
RBAM_029180__    101 FIRELKAQELVPDYITIDIAHGHSNAVISMIQFIKEHVPESFVIAGNVGT    150

BSNT_04728___    151 PEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA    200
                     ||||||||.|||||||||||||||||||||||||||||||||||||||||
RBAM_029180__    151 PEAVRELERAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA    200

BSNT_04728___    201 SKPIIADGGIRTHGDIAKSIRFGATMVMIGSLFAGHEESPGQTIEKDGKL    250
                     ||||||||||||||||||||||||:||||||||||||||||||||.||||
RBAM_029180__    201 SKPIIADGGIRTHGDIAKSIRFGASMVMIGSLFAGHEESPGQTIEIDGKL    250

BSNT_04728___    251 YKEYFGSASEFQKGEKKNVEGKKMHVAHKGSIKDTLIEMEQDLQSSISYA    300
                     ||||||||||||||||||||||||||.||||::|||:|||||||||||||
RBAM_029180__    251 YKEYFGSASEFQKGEKKNVEGKKMHVEHKGSLQDTLVEMEQDLQSSISYA    300

BSNT_04728___    301 GGTKLDAIRNVDYVIVKNSIFNGDKY    326
                     ||..|:||||||||||||||||||::
RBAM_029180__    301 GGNTLEAIRNVDYVIVKNSIFNGDRF    326


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.