Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04728 and RBAM_029180

See Amino acid alignment / Visit BSNT_04728 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:17
# Commandline: needle
#    -asequence dna-align/BSNT_04728___guaC.1.9828.seq
#    -bsequence dna-align/RBAM_029180___guaC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04728___guaC-RBAM_029180___guaC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04728___guaC-RBAM_029180___guaC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04728___guaC
# 2: RBAM_029180___guaC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 987
# Identity:     776/987 (78.6%)
# Similarity:   776/987 (78.6%)
# Gaps:          12/987 ( 1.2%)
# Score: 3002.0
# 
#
#=======================================

BSNT_04728___      1 ATGGAAAACGTATTTGATTACGAAGATATTCAGCTAATTCCTGCAAAATG     50
                     ||||||||.||||||||||||||||||||||||||.||||||||||||||
RBAM_029180__      1 ATGGAAAATGTATTTGATTACGAAGATATTCAGCTGATTCCTGCAAAATG     50

BSNT_04728___     51 CATTGTAAATAGCCGTTCAGAATGTGATACATCCG-TACGTTTAGGCGGA     99
                     ||||||..|.|||||.||.||||||||||||||.| ||| .||.||||||
RBAM_029180__     51 CATTGTGGACAGCCGATCTGAATGTGATACATCAGTTAC-ATTGGGCGGA     99

BSNT_04728___    100 CGTACATTTAAATTGCCCGTCGTCCCTGCCAATATGCAGACGATTATAGA    149
                     |..||.||||||.|.||.|||||.||.|||||.|||||||||||.|||||
RBAM_029180__    100 CACACGTTTAAACTTCCGGTCGTGCCGGCCAACATGCAGACGATAATAGA    149

BSNT_04728___    150 TGAAAAACTAGCGATTTCATTAGCCGAAAATGGCTACTTTTATGTGATGC    199
                     ||||||..|.|||...|...|.||.|||||.||.||.||||||.|.||||
RBAM_029180__    150 TGAAAACATCGCGGCCTGGCTCGCGGAAAACGGGTATTTTTATATCATGC    199

BSNT_04728___    200 ACCGATTTGAACCTGAAAAACGGATTGATTTTATTAAAGATATGAACGCA    249
                     ||||.||.|||||.||||||||..|.|.||||.|..|.||||||||.||.
RBAM_029180__    200 ACCGCTTCGAACCGGAAAAACGCCTGGCTTTTGTCCAGGATATGAAAGCG    249

BSNT_04728___    250 CGCGG-GTTATTCTCTTCTATCAGCGTGGGCGTCAAAGATGAGGAGTATG    298
                     ||||| .|.||| |||||.|||||.||.|||||.||.||..|.||.||||
RBAM_029180__    250 CGCGGACTGATT-TCTTCCATCAGTGTCGGCGTGAAGGAAAATGATTATG    298

BSNT_04728___    299 AATTTGTCCGCCAGCTG---GCAGAAGAAAATCTGACTCCTGAATACGTG    345
                     ||||..||||..|||||   |||.|.||...|.||   ||.||.||..|.
RBAM_029180__    299 AATTCATCCGGGAGCTGAAAGCACAGGAGCTTGTG---CCGGATTATATT    345

BSNT_04728___    346 ACAATTGACATTGCTCACGGGCACTCAAATGCTGTCATTGAAATGATCCA    395
                     ||.|||||.||.||.|||||.||.||.|||||.||.||....||||||||
RBAM_029180__    346 ACCATTGATATCGCGCACGGCCATTCCAATGCCGTGATCAGCATGATCCA    395

BSNT_04728___    396 GCACCTTAAAAAACATTTGCCGGACAGCTTTGTTATTGCTGGCAACGTCG    445
                     .....|||||.|||||.|.|||||.||||||||.||.||.||.||.||||
RBAM_029180__    396 ATTTATTAAAGAACATGTCCCGGAAAGCTTTGTCATCGCAGGGAATGTCG    445

BSNT_04728___    446 GAACGCCGGAAGCGGTCAGAGAGCTTGAAAATGCGGGAGCGGATGCCACT    495
                     |.|||||.|||||.||.||.|||||.|||...|||||.||.||.||.||.
RBAM_029180__    446 GGACGCCTGAAGCCGTAAGGGAGCTGGAACGCGCGGGCGCTGACGCGACA    495

BSNT_04728___    496 AAAGTCGGCATCGGACCGGGAAAAGTATGTATTACGAAAATCAAAACCGG    545
                     |||||.||.|||||.||.||.|||||.||.||.||.|||||.||||||||
RBAM_029180__    496 AAAGTGGGAATCGGCCCCGGGAAAGTCTGCATCACCAAAATTAAAACCGG    545

BSNT_04728___    546 CTTCGGCACAGGCGGCTGGCAATTAGCGGCGCTGCGCTGGTGTGCCAAGG    595
                     ||||||.||.|||||.|||||||||||.|||||.||||||||.||.||.|
RBAM_029180__    546 CTTCGGAACCGGCGGATGGCAATTAGCCGCGCTTCGCTGGTGCGCAAAAG    595

BSNT_04728___    596 CTGCCAGCAAACCGATTATCGCGGATGGCGGCATCCGCACCCATGGCGAC    645
                     |.||.|||||||||||.||.||.||.||||||||||||||.||.|||||.
RBAM_029180__    596 CGGCGAGCAAACCGATCATTGCTGACGGCGGCATCCGCACACACGGCGAT    645

BSNT_04728___    646 ATCGCAAAATCAATCCGATTCGGCGCAACGATGGTCATGATCGGTTCACT    695
                     ||.||.|||||.|||||||||||||||.|.||||||||||||||.|||.|
RBAM_029180__    646 ATTGCGAAATCCATCCGATTCGGCGCATCCATGGTCATGATCGGATCATT    695

BSNT_04728___    696 ATTTGCCGGACACGAAGAATCGCCAGGCCAAACGATCGAAAAAGACGGAA    745
                     |||.|||||.|||||||||||.||.||.|||||||||||||..||.||||
RBAM_029180__    696 ATTCGCCGGCCACGAAGAATCACCGGGACAAACGATCGAAATCGATGGAA    745

BSNT_04728___    746 AGCTTTACAAGGAGTACTTCGGCTCAGCCTCTGAATTCCAAAAAGGCGAA    795
                     ||||.|||||.||.||.||||||||.||.||||||||.||||||||||||
RBAM_029180__    746 AGCTGTACAAAGAATATTTCGGCTCCGCTTCTGAATTTCAAAAAGGCGAA    795

BSNT_04728___    796 AAGAAAAATGTCGAAGGCAAAAAAATGCATGTGGCGCATAAAGGCTCAAT    845
                     ||||||||.|||||||||||||||||||||||.|.|||||||||.||..|
RBAM_029180__    796 AAGAAAAACGTCGAAGGCAAAAAAATGCATGTCGAGCATAAAGGGTCTTT    845

BSNT_04728___    846 CAAGGATACACTGATTGAAATGGAGCAGGATCTTCAATCTTCTATTTCTT    895
                     ..||||.||.|||.|||||||||||||||||||.||||||||.||.||||
RBAM_029180__    846 ACAGGACACGCTGGTTGAAATGGAGCAGGATCTGCAATCTTCCATCTCTT    895

BSNT_04728___    896 ATGCAGGCGG-AACAAAGCTTGACGCCATCCGCAATGTGGATTATGTGAT    944
                     |.||.||||| ||.|.| ||.||.||||||||||||||.||.||.|||||
RBAM_029180__    896 ACGCCGGCGGCAATACA-CTCGAAGCCATCCGCAATGTCGACTACGTGAT    944

BSNT_04728___    945 TGTGAAGAATTCCATTTTTAATGGGGATAAATATTAA    981
                     .||.||.||.||.|||||.||.||.||.|.||.||||
RBAM_029180__    945 CGTAAAAAACTCTATTTTCAACGGCGACAGATTTTAA    981


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