Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_04717 and RBAM_029110

See DNA alignment / Visit BSNT_04717 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:16
# Commandline: needle
#    -asequence pep-align/BSNT_04717___yuiD.1.9828.seq
#    -bsequence pep-align/RBAM_029110___yuiD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04717___yuiD-RBAM_029110___yuiD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04717___yuiD-RBAM_029110___yuiD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04717___yuiD
# 2: RBAM_029110___yuiD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 158
# Identity:     140/158 (88.6%)
# Similarity:   151/158 (95.6%)
# Gaps:           0/158 ( 0.0%)
# Score: 707.0
# 
#
#=======================================

BSNT_04717___      1 MELLTNFPLLSSLAAIIFAQVIKVPIQFIVSRKLDWSLVTSTGGMPSSHS     50
                     |::|.|||||:|.||||||||:|||||||||:||||||||||||||||||
RBAM_029110__      1 MDVLMNFPLLASFAAIIFAQVVKVPIQFIVSKKLDWSLVTSTGGMPSSHS     50

BSNT_04717___     51 AAVTALSTGVALEHGLDSSLFAVSAIFAVITMFDATGVRRHAGEQATVIN    100
                     |||||||||||||.||||.|||::||||||||||||||||||||||||||
RBAM_029110__     51 AAVTALSTGVALEQGLDSPLFAIAAIFAVITMFDATGVRRHAGEQATVIN    100

BSNT_04717___    101 KLVIDFNRFVNEAKDFPKAAEKEKQKKLKELLGHQPIEVFFGGLTGILLT    150
                     ||||||||||:|||||.||.|||||||||||||||||||||||:|||:||
RBAM_029110__    101 KLVIDFNRFVSEAKDFQKAEEKEKQKKLKELLGHQPIEVFFGGVTGIVLT    150

BSNT_04717___    151 LVLAYFFM    158
                     |:|.||||
RBAM_029110__    151 LILDYFFM    158


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.