Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_04666 and RBAM_028790

See DNA alignment / Visit BSNT_04666 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:08
# Commandline: needle
#    -asequence pep-align/BSNT_04666___comQ.1.9828.seq
#    -bsequence pep-align/RBAM_028790___comQ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04666___comQ-RBAM_028790___comQ.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04666___comQ-RBAM_028790___comQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04666___comQ
# 2: RBAM_028790___comQ
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 304
# Identity:     115/304 (37.8%)
# Similarity:   171/304 (56.2%)
# Gaps:          35/304 (11.5%)
# Score: 529.5
# 
#
#=======================================

BSNT_04666___      1 MKEIVDENILNEDLKVKLISFIKEKKQFSFAELAYYHYIAFDGKNDKAIE     50
                              :|:::...:::|...|..|.|||||..||:||.|.:.:.|.
RBAM_028790__      1 ---------MNKEVSKHVVNFADTKNNFPFAELALDHYLAFGGNDFEEIL     41

BSNT_04666___     51 LLASGIELLILSADIFDDIEDKDNLQASWMKLDPSIATNAATALYTLSLQ    100
                     .|.:|||||||:|||||||:|||...|.|||:|.:::.|.||.:||::||
RBAM_028790__     42 DLGTGIELLILAADIFDDIQDKDRPNAEWMKMDQAVSLNIATLIYTIALQ     91

BSNT_04666___    101 VIGSVSNHPKLLSLTLQYSLQSLQGQHVDLNLTASSESEYIEMIKLKSGS    150
                     ||.|......||...|:|::|:::|||:||.....:|::.|||||.|||:
RBAM_028790__     92 VISSRDPEGLLLKTALKYTVQAMEGQHIDLVDNTLTENQCIEMIKKKSGA    141

BSNT_04666___    151 LVTLPSILGVYLATGEYNETVEEYSRYLGIVEQIANDHYGLYYPNYND-F    199
                     |..|.|:||..|||..|...||:|:.|:|:..|:.||.:.:.|.|..: |
RBAM_028790__    142 LTALASMLGAVLATKRYQSDVEQYAFYIGVAAQLKNDLFEIMYVNNTETF    191

BSNT_04666___    200 KTRHTLAFNYLKNKFNQSSIDLLNFYAQENHMINNLE--DLKGKLRESGV    247
                     ..:..||..:|:.|||..|.:|||         ||.:  :||..|.:|||
RBAM_028790__    192 FKKTNLAIQFLEKKFNTVSTELLN---------NNFQQSELKRLLLDSGV    232

BSNT_04666___    248 IQYLNVIKNLAVENFKESFKKLRLDEQRKNKLLIQLLRGI----------    287
                     |.|::|:.|:.....|...:.|.|..:.||.|:.::....          
RBAM_028790__    233 IHYMSVMINVYNLKVKNGLENLNLTLENKNYLIKKICENEKVDKNAGNSK    282

BSNT_04666___    287 ----    287
                         
RBAM_028790__    283 LFSS    286


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