Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04666 and RBAM_028790
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:08
# Commandline: needle
# -asequence dna-align/BSNT_04666___comQ.1.9828.seq
# -bsequence dna-align/RBAM_028790___comQ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04666___comQ-RBAM_028790___comQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04666___comQ-RBAM_028790___comQ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04666___comQ
# 2: RBAM_028790___comQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1022
# Identity: 531/1022 (52.0%)
# Similarity: 531/1022 (52.0%)
# Gaps: 319/1022 (31.2%)
# Score: 1273.5
#
#
#=======================================
BSNT_04666___ 1 ATGAAGGAGATTGTGGATGAAAATATTTTAAATGAGGACTTAAA-----A 45
.|||| ||||..||.|..|||| .
RBAM_028790__ 1 ----------------GTGAA-------TAAAGAAGTAAGTAAACATGTT 27
BSNT_04666___ 46 GTGAA----GCTCATTTCTTTTATCAAAGAAAAAAAACAA-TTTTCATTT 90
||||| |||.|| |.||||||||| |||.|||||
RBAM_028790__ 28 GTGAATTTTGCTGAT--------------ACAAAAAACAACTTTCCATTT 63
BSNT_04666___ 91 GCAGAACTGGCTTATTACCATTACATAGCATTTG------ATG-----GA 129
||.||..|.||||...|.|||||..|.||.|||| ||| ||
RBAM_028790__ 64 GCTGAGTTAGCTTTAGATCATTATTTGGCTTTTGGAGGGAATGATTTTGA 113
BSNT_04666___ 130 AAAAACGACAAAGCAATTGAGTTATTGGCGTCAGGTATAGAACTTTTAAT 179
|.||| .|.|.||.||| |...||||.||.|||||..|.||
RBAM_028790__ 114 AGAAA--------TACTAGATTTA---GGAACAGGGATTGAACTGCTTAT 152
BSNT_04666___ 180 TTTATCTGCGGACATTTTTGACGATATTGAGGATAAGGACAATCTTC--- 226
.|||.|.||.||.||||||||.||.||..|.||||||| |||.||
RBAM_028790__ 153 CTTAGCGGCTGATATTTTTGATGACATACAAGATAAGG---ATCGTCCAA 199
BSNT_04666___ 227 AGGCTTCTTGGATGAAATTAGATCCTTCTATAGC---AACTAACGCAGCT 273
|.||....|||||||||.|.||||...||.||.| ||.||..|||
RBAM_028790__ 200 ATGCAGAATGGATGAAAATGGATCAGGCTGTATCTTTAAATATTGCA--- 246
BSNT_04666___ 274 ACCGCACTTTATACATTAAGTCTGCAAGTAATAGGTTCAGTCTCAAATCA 323
|||..|.||||||||.||..|||.|||||.||| ||| ||||.| .|
RBAM_028790__ 247 ACCTTAATTTATACAATAGCTCTCCAAGTTATA---TCA-TCTCGA--GA 290
BSNT_04666___ 324 TCCAAAACTTTTAAGCCTTA----------CTTTGCAATATTCACTCCAA 363
|||..||...||| ||| ||.|..|||||.||.|.|||
RBAM_028790__ 291 TCCGGAAGGATTA----TTACTCAAGACAGCTCTAAAATATACAGTTCAA 336
BSNT_04666___ 364 TCTTTACAAGGACAACATGTAGATTTG---------AATTTAACAGCCTC 404
.||.|..||||.|||||..|.|||||| |.||||||
RBAM_028790__ 337 GCTATGGAAGGGCAACACATTGATTTGGTTGATAATACTTTAAC------ 380
BSNT_04666___ 405 ATCAGAATCAGAGTAT--ATTGAAATGATTAAACTTAAGTCGGGTTCTCT 452
|.|.||||| || ||||||||||||||....|||||.||..||.|
RBAM_028790__ 381 -TGAAAATCA----ATGCATTGAAATGATTAAGAAAAAGTCAGGGGCTTT 425
BSNT_04666___ 453 GGTAACATTGCCCAGTATTCTTGGTG-TATATCTGGCAACTGGAGAATAT 501
|..|.|.||..|.|||||.||.|||| |.|| ||.|||||| .||..|
RBAM_028790__ 426 GACAGCTTTAGCAAGTATGCTGGGTGCTGTA-CTTGCAACT---AAACGT 471
BSNT_04666___ 502 AATGAAACAGTTGAGGAGTA-------TTCACGTTATTTAGGTATAG--- 541
.||.||.|||.||.||||.| ||| |||.||||..|.|
RBAM_028790__ 472 TATCAATCAGATGTGGAGCAGTATGCTTTC----TATATAGGGGTTGCAG 517
BSNT_04666___ 542 -TCGAGCAAATTGCAAATGATCACTATGGACTTTATTACCCTAACTATAA 590
||.|..||| |||||| |||||| |.| .||||
RBAM_028790__ 518 CTCAATTAAA----AAATGA-----------TTTATT----TGA-GATAA 547
BSNT_04666___ 591 TG------------------AC----TTCAAAACTAGACATACGCTTGCC 618
|| || ||||||| |||||.| .|||.|
RBAM_028790__ 548 TGTATGTGAATAATACGGAAACCTTTTTCAAAA--AGACAAA--TTTGGC 593
BSNT_04666___ 619 --TTCAATTATCTTA-AAAATAAATTTAAC-CAATCATCAATTGACTTAT 664
||||.| ||||| |.||.|||||.||| ||.| |||.|..||.||.|
RBAM_028790__ 594 AATTCAGT--TCTTAGAGAAAAAATTCAACACAGT-ATCCACAGAATTGT 640
BSNT_04666___ 665 TAAATTTTTATGCGCAAGAAAATCATATGATAAATAATTTGGAAGATTTG 714
|||| |||.||..| |.||.||| .|||.||.
RBAM_028790__ 641 TAAA----------CAACAACTT-------TCAACAAT----CAGAGTTA 669
BSNT_04666___ 715 AAGGGAAAG-------TTAAGAGAATCAGGTGTAATACAATATTTG---- 753
| ||.| || |||.||.|||||.||.||.|||.||
RBAM_028790__ 670 A----AACGGCTTCTCTT---AGACTCTGGTGTTATCCATTATATGTCAG 712
BSNT_04666___ 754 --------AATGT-TATA-----------AAAAATTTAGCAGTGGAAAAT 783
||||| |||| |||||| |.|.|.||||||
RBAM_028790__ 713 TGATGATTAATGTATATAATTTGAAAGTGAAAAAT---GGACTCGAAAAT 759
BSNT_04666___ 784 -----------TTTAAGGAA-----------TCATTCAAA---------A 802
||||..||| |.|||.||| |
RBAM_028790__ 760 TTAAATTTGACTTTAGAGAACAAAAACTATTTAATTAAAAAAATTTGCGA 809
BSNT_04666___ 803 AACTGAGATTAGATGAACAAA-------GAAAAAATAAATTACTTA-TTC 844
||.||||| ||.||.|.||| ||||.|.|||||||.||| |||
RBAM_028790__ 810 AAATGAGA--AGGTGGATAAAAATGCAGGAAATAGTAAATTATTTAGTTC 857
BSNT_04666___ 845 --AATTATTAAGGGGGATTTAA 864
||
RBAM_028790__ 858 GTAA------------------ 861
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