Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_04614 and RBAM_028400

See DNA alignment / Visit BSNT_04614 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:03
# Commandline: needle
#    -asequence pep-align/BSNT_04614.1.9828.seq
#    -bsequence pep-align/RBAM_028400___yugO.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04614-RBAM_028400___yugO.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04614-RBAM_028400___yugO.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04614
# 2: RBAM_028400___yugO
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 328
# Identity:     237/328 (72.3%)
# Similarity:   292/328 (89.0%)
# Gaps:           0/328 ( 0.0%)
# Score: 1280.0
# 
#
#=======================================

BSNT_04614         1 MKSNRIFISWLRWPLFIRIGVIILCLILLFGQIIYILEPKQFTSVFEGIW     50
                     |||||||||||||||::|||:||:.|||||||:||:||||||||||||||
RBAM_028400__      1 MKSNRIFISWLRWPLYVRIGLIIIALILLFGQLIYMLEPKQFTSVFEGIW     50

BSNT_04614        51 WAVVTVSTVGYGDYVPHTPLGQAAGILLILSGASFVTAYFATLSAAAFSR    100
                     |||:||:|||||||||.|||||.||::|:|||||||||||||||:|.||:
RBAM_028400__     51 WAVITVATVGYGDYVPQTPLGQIAGMVLVLSGASFVTAYFATLSSAVFSK    100

BSNT_04614       101 QHRYIEGKVAYKGRDHIILIGWNEKTNRLLKDLQLAAPSKTVVLIDESLT    150
                     ||||:|||||:||:.|:||||||||::.|||:||..||||||||||:||.
RBAM_028400__    101 QHRYVEGKVAFKGKGHVILIGWNEKSHMLLKELQHIAPSKTVVLIDDSLR    150

BSNT_04614       151 EGPLIENVHFIRGHAADDGTLKRANITEAESVMITADQYKSETDADMLSV    200
                     ||||||||||||||||||.||.:||||||::|::||||.|:|::||||||
RBAM_028400__    151 EGPLIENVHFIRGHAADDSTLNKANITEADTVILTADQQKNESEADMLSV    200

BSNT_04614       201 LTLLSVKGLNPLAYCIVEILTDRFVTNAERAGANQIIGTSEFISRAMLQH    250
                     ||||::|||:|..||||||||:|:|.||||||||:|:.||...||.|.:|
RBAM_028400__    201 LTLLAIKGLHPSVYCIVEILTERYVKNAERAGANKILCTSRLSSRVMFEH    250

BSNT_04614       251 YQVKLRPSKQQIGIKLTLDQHVELLAVPDELKGAAYKTCVLYFLDHNTTI    300
                     |:|||:.:|.|....|||::.|.::.||:||||::|..|.||:|..||||
RBAM_028400__    251 YRVKLQLAKPQTLSDLTLEKKVRIIPVPEELKGSSYHDCALYYLKRNTTI    300

BSNT_04614       301 IGVQKKEGPMLSPPLTYKVLETDQFLAI    328
                     ||:||:|||||:|||:|:||:||.|||:
RBAM_028400__    301 IGIQKEEGPMLTPPLSYQVLDTDLFLAL    328


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