Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04614 and RBAM_028400

See Amino acid alignment / Visit BSNT_04614 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:03
# Commandline: needle
#    -asequence dna-align/BSNT_04614.1.9828.seq
#    -bsequence dna-align/RBAM_028400___yugO.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04614-RBAM_028400___yugO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04614-RBAM_028400___yugO.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04614
# 2: RBAM_028400___yugO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1004
# Identity:     716/1004 (71.3%)
# Similarity:   716/1004 (71.3%)
# Gaps:          34/1004 ( 3.4%)
# Score: 2404.5
# 
#
#=======================================

BSNT_04614         1 ATGAAATCAAATCGGATATTTATTTCATGGCTCAGGTGGCCGTTATTTAT     50
                     |||||||||||.||.||.||||||||.|||||.||.||||||||||.|.|
RBAM_028400__      1 ATGAAATCAAACCGTATTTTTATTTCCTGGCTGAGATGGCCGTTATATGT     50

BSNT_04614        51 CCGAATCGGGGTTATTATTTTATGTC--TGATTCTTTTGTTCGGCCAAAT     98
                     .||.|||||..|.||.|  ||||..|  |||||.|.||||||||||||.|
RBAM_028400__     51 TCGGATCGGACTGATCA--TTATCGCCTTGATTTTATTGTTCGGCCAACT     98

BSNT_04614        99 CATTTATATACTTGAGCCTAAGCAGTTCACTTCGGTATTCGAAGGCATTT    148
                     ||||||.||.||||||||.|||||.|||||.||.||.||.|||||.||||
RBAM_028400__     99 CATTTACATGCTTGAGCCGAAGCAATTCACGTCTGTGTTTGAAGGGATTT    148

BSNT_04614       149 GGTGGGCTGTCGTTACGGTTTCCACAGTCGGTTATGGAGACTATGTGCCG    198
                     |||||||.||..|||||||..||||||||||.||.||.||.||.||.||.
RBAM_028400__    149 GGTGGGCGGTTATTACGGTGGCCACAGTCGGCTACGGCGATTACGTTCCC    198

BSNT_04614       199 CACACGCCGCTGGGACAGGCAGCCGGAATACTGCTGATTTTGAGCGGAGC    248
                     ||.||||||||.||.|||...|||||.||..||||..|.||.||||||||
RBAM_028400__    199 CAGACGCCGCTCGGGCAGATTGCCGGCATGGTGCTTGTATTAAGCGGAGC    248

BSNT_04614       249 AAGCTTTGTCACAGCGTATTTCGCTACGTTATCAGCGGCCGCATTCAGCA    298
                     .||.|||||.||.||.||||||||.|||.|.||..|.||||..|||||||
RBAM_028400__    249 GAGTTTTGTGACCGCCTATTTCGCCACGCTTTCTTCAGCCGTGTTCAGCA    298

BSNT_04614       299 GACAGCATCGCTACATCGAAGGAAAAGTTGCTTACAAAGGCCGGGACCAC    348
                     .||||||||||||..|||||||.||.||.||.|..||||||..||..|||
RBAM_028400__    299 AACAGCATCGCTATGTCGAAGGGAAGGTCGCCTTTAAAGGCAAGGGGCAC    348

BSNT_04614       349 ATCATTCTGATCGGGTGGAATGAAAAAACAAACCGGCTTTTGAAGGACCT    398
                     .|||||||.|||||.||||||||.||..|..|...|.|..||||.||.||
RBAM_028400__    349 GTCATTCTTATCGGATGGAATGAGAAGTCGCATATGTTGCTGAAAGAACT    398

BSNT_04614       399 TCAGCTTGCCGCCCCTTCCAAAACAGTCGTACTAATCGATGAATCCTTAA    448
                     .||||....|||.||.||.|||||.|||||.||.||.|||||.||.||||
RBAM_028400__    399 GCAGCACATCGCGCCGTCAAAAACTGTCGTCCTGATTGATGATTCATTAA    448

BSNT_04614       449 CAGAAGGCCCGCTTATTGAAAACGTTCATTTCATACGCGGGCACGCTGCC    498
                     ..|||||.|||||||||||||||||.||||||||.|||||.||.||.||.
RBAM_028400__    449 GGGAAGGGCCGCTTATTGAAAACGTCCATTTCATCCGCGGACATGCCGCT    498

BSNT_04614       499 GATGATGGGACACTGAAACGGGCCAATATTACTGAAGCGGAATCAGTGAT    548
                     |||||..|.||.||.||...|||.||||||||.|||||.||..|.||.||
RBAM_028400__    499 GATGACAGTACGCTCAATAAGGCGAATATTACGGAAGCCGATACCGTCAT    548

BSNT_04614       549 GATTACTGCCGATCAGTATAAAAGTGAAACTGATGCTGATATGCTGTCAG    598
                     ..|.||.||.||.|||.|.||||.||||.|.||.||||||||||||||.|
RBAM_028400__    549 TTTGACAGCAGACCAGCAGAAAAATGAATCCGAAGCTGATATGCTGTCGG    598

BSNT_04614       599 TGCTGACTCTTTT----ATCTGTTAAAGGGCTTAATCC--CCTTGCTTAC    642
                     |..|.||.|||.|    |||    ||||||||..||||  ||  |.|||.
RBAM_028400__    599 TATTAACGCTTCTCGCCATC----AAAGGGCTGCATCCGTCC--GTTTAT    642

BSNT_04614       643 TGCATCGTCGAAATTTTGACTGACCGTTTTGTCACCAATGCAGAGCGGGC    692
                     ||.|||||.||||||||.||.||.||.|.|||||..||.||.|||||.||
RBAM_028400__    643 TGTATCGTGGAAATTTTAACGGAACGGTATGTCAAAAACGCCGAGCGCGC    692

BSNT_04614       693 AGGCGCAAACCAAATCATCGGAACTTCA-----GAATTTATC-AGCCGGG    736
                     |||.||.||..|.||..|..|.||.|||     |      || |||||||
RBAM_028400__    693 AGGAGCCAATAAGATTCTGTGCACATCACGCCTG------TCGAGCCGGG    736

BSNT_04614       737 CGATGCTGCAGCATTACCAAGTCAAGTTACGGCCGTCTAAACAGCAGATC    786
                     .||||.|..|||||||||..||||||.|.|.||...|.||||.||| |.|
RBAM_028400__    737 TGATGTTTGAGCATTACCGGGTCAAGCTGCAGCTTGCCAAACCGCA-AAC    785

BSNT_04614       787 GGAATCA-AGCTGACACTTGATCAGCATGTGGAGCTTC-TTGCTGTTCCT    834
                     |...||| |.|||||.||.||..|..|.|| |.||.|| ||.|.||.||.
RBAM_028400__    786 GCTGTCAGATCTGACGCTGGAGAAAAAGGT-GCGCATCATTCCCGTCCCC    834

BSNT_04614       835 GACGAACTAAAGGGAGCGGCTTA-CAAAACCTGTGTTCTCTATTTCCTTG    883
                     ||.|||.|||||||..|..|||| ||..| |||||..|||||||..||..
RBAM_028400__    835 GAGGAATTAAAGGGCTCATCTTATCATGA-CTGTGCGCTCTATTATCTCA    883

BSNT_04614       884 ATCACAACACAACAATTATAGGCGTACAAAAAAAGGAGGGACCGATGCTT    933
                     |.|..||.||.||.||.||.|||.||||||||.|.|||||.||||||||.
RBAM_028400__    884 AACGGAATACCACGATCATCGGCATACAAAAAGAAGAGGGGCCGATGCTG    933

BSNT_04614       934 TCCCCTCCTCTTACATACAAGGTGCTCGAAACAGACCAATTCCTTGCCAT    983
                     .|||||||.||..|||||.||||||||||.||.||.|..||..|.||..|
RBAM_028400__    934 ACCCCTCCCCTGTCATACCAGGTGCTCGATACTGATCTGTTTTTGGCTCT    983

BSNT_04614       984 CTAG    987
                     .||.
RBAM_028400__    984 TTAA    987


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04614 and RBAM_028400

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
