Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_04436 and RBAM_027390

See DNA alignment / Visit BSNT_04436 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:54
# Commandline: needle
#    -asequence pep-align/BSNT_04436___ytrB.1.9828.seq
#    -bsequence pep-align/RBAM_027390___ytrB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04436___ytrB-RBAM_027390___ytrB.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04436___ytrB-RBAM_027390___ytrB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04436___ytrB
# 2: RBAM_027390___ytrB
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 292
# Identity:     248/292 (84.9%)
# Similarity:   273/292 (93.5%)
# Gaps:           0/292 ( 0.0%)
# Score: 1289.0
# 
#
#=======================================

BSNT_04436___      1 MIELRQLSKAIDGNQVLKDVSLTIEKGEIFGLLGRNGSGKTTMLRLIQQI     50
                     |||||.|||.|||.:||||:||||.|||||||||||||||||:|||||||
RBAM_027390__      1 MIELRNLSKTIDGKEVLKDISLTIGKGEIFGLLGRNGSGKTTLLRLIQQI     50

BSNT_04436___     51 IFADSGTILFDGVEIKKHPKVKQNIIYMPVQNPFYDKYTYKQLVDILRRI    100
                     :..|.||:||:.||||:|||||||||||||:|||||||||||||.|:.||
RBAM_027390__     51 LLPDQGTVLFNQVEIKRHPKVKQNIIYMPVENPFYDKYTYKQLVAIVSRI    100

BSNT_04436___    101 YPKFDVTYANELMNRYEIPETKKYRELSTGLKKQLSLVLSFAARPALILL    150
                     ||.|||||||||||||.||||||||||||||||||:|||:||:|||||||
RBAM_027390__    101 YPNFDVTYANELMNRYGIPETKKYRELSTGLKKQLALVLAFASRPALILL    150

BSNT_04436___    151 DEPTDGIDAVTRHDVLQLMVDEVAERDTSILITSHRLEDIERMCNRIGFL    200
                     ||||||||||||||||||||||||||:|||||||||||||||||||||||
RBAM_027390__    151 DEPTDGIDAVTRHDVLQLMVDEVAERETSILITSHRLEDIERMCNRIGFL    200

BSNT_04436___    201 EDNRLTNVMDLDELKEEYIKIQMAFDTDVNLAIREQNIPMLDQAGVFYTV    250
                     |.|:||||||||::||||:||||||:.:|.|.|||||||:||.|||||||
RBAM_027390__    201 EGNQLTNVMDLDDMKEEYMKIQMAFEENVALKIREQNIPILDHAGVFYTV    250

BSNT_04436___    251 LIPKSDEEKKSFLRELKPKVWNELPVNLEEVFIAKFGGKRRW    292
                     ||.|:||:||:||:||:|||||||||||||||||||||.|||
RBAM_027390__    251 LIQKNDEKKKNFLQELQPKVWNELPVNLEEVFIAKFGGNRRW    292


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