Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04436 and RBAM_027390

See Amino acid alignment / Visit BSNT_04436 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:55
# Commandline: needle
#    -asequence dna-align/BSNT_04436___ytrB.1.9828.seq
#    -bsequence dna-align/RBAM_027390___ytrB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04436___ytrB-RBAM_027390___ytrB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04436___ytrB-RBAM_027390___ytrB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04436___ytrB
# 2: RBAM_027390___ytrB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 888
# Identity:     693/888 (78.0%)
# Similarity:   693/888 (78.0%)
# Gaps:          18/888 ( 2.0%)
# Score: 2653.0
# 
#
#=======================================

BSNT_04436___      1 ATGATTGAACTGCGGCAGCTGTCAAAAGCGATTGACGGCAATCAAGTATT     50
                     |||||||||.|||||.|.||.||||||.||||.|||||.||..||||..|
RBAM_027390__      1 ATGATTGAATTGCGGAATCTCTCAAAAACGATAGACGGTAAAGAAGTGCT     50

BSNT_04436___     51 AAAAGATGTTTCATTAACAATCGAAAAAGGAGAAATCTTTGGATTGCTTG    100
                     .||.|||.||||..|.||.||||.||||||.|||||.||.||..||||.|
RBAM_027390__     51 CAAGGATATTTCGCTCACCATCGGAAAAGGGGAAATTTTCGGGCTGCTCG    100

BSNT_04436___    101 GACGCAACGGATCGGGCAAAACGACGATGCTTCGCTTAATCCAGCAAATC    150
                     |.||.||||||||.||.|||||.||..||||.||..|.||.|||||.|  
RBAM_027390__    101 GGCGAAACGGATCAGGGAAAACAACACTGCTCCGGCTCATTCAGCAGA--    148

BSNT_04436___    151 ATTTTTGCTGACAG----CGGAACGATTTTATTTGA-CGGCGTAGAAATC    195
                       ||.|||||.|.|    .||.|||.||||||||.| |.| ||.|||||.
RBAM_027390__    149 --TTCTGCTGCCGGATCAAGGGACGGTTTTATTTAATCAG-GTGGAAATA    195

BSNT_04436___    196 AAAAAGCACCCGAAGGTCAAACAAAATATCATCTACATGCCTGTTCAAAA    245
                     ||...|||.|||||.||.|||||.||.|||||.||.|||||||||.||||
RBAM_027390__    196 AAGCGGCATCCGAAAGTAAAACAGAACATCATTTATATGCCTGTTGAAAA    245

BSNT_04436___    246 TCCTTTTTACGACAAGTATACATACAAGCAGCTTGTTGATATCCTGAGAA    295
                     |||||||||.||||||||||||||.||.||||||||||..||..|.||.|
RBAM_027390__    246 TCCTTTTTATGACAAGTATACATATAAACAGCTTGTTGCGATTGTAAGCA    295

BSNT_04436___    296 GAATATATCCGAAATTTGATGTCACGTACGCGAATGAACTGATGAACAGA    345
                     ||||.||||||||.||||||||.||.|||||.|||||.|||||||||||.
RBAM_027390__    296 GAATCTATCCGAATTTTGATGTGACTTACGCCAATGAGCTGATGAACAGG    345

BSNT_04436___    346 TACGAAATTCCAGAAACGAAAAAATACCGTGAGCTGTCGACAGGCTTGAA    395
                     ||||..|||||.||||||||.|||||||||||..|.|||||||||.||||
RBAM_027390__    346 TACGGCATTCCGGAAACGAAGAAATACCGTGAATTATCGACAGGCCTGAA    395

BSNT_04436___    396 AAAACAGCTGTCGCTCGTTCTGTCGTTTGCGGCGAGACCGGCGCTGATCC    445
                     |||||||||..|||||||.||..|.|||||..|..|.|||||.||.||||
RBAM_027390__    396 AAAACAGCTTGCGCTCGTCCTTGCCTTTGCTTCACGCCCGGCTCTTATCC    445

BSNT_04436___    446 TCCTTGATGAGCCGACGGATGGTATTGATGCGGTAACTAGACATGATGTG    495
                     |..|.|||||.||||||||.||.|||||.||.|||||..|.|||||.|||
RBAM_027390__    446 TTTTGGATGAACCGACGGACGGAATTGACGCCGTAACGCGTCATGACGTG    495

BSNT_04436___    496 CTGCAGCTGATGGTCGATGAAGTGGCAGAGCGTGATACGAGTATCCTGAT    545
                     ||||||||.|||||.|||||||||||.||.||.||.|||||.||.|||||
RBAM_027390__    496 CTGCAGCTTATGGTGGATGAAGTGGCTGAACGGGAAACGAGCATTCTGAT    545

BSNT_04436___    546 TACGTCTCACCGGCTTGAAGACATAGAGCGGATGTGCAACCGAATTGGCT    595
                     |||.||.|||||..|.|||||.||.|||||.|||||||||||.||.||.|
RBAM_027390__    546 TACCTCACACCGTTTAGAAGATATTGAGCGAATGTGCAACCGGATCGGGT    595

BSNT_04436___    596 TTCTTGAA-GATAACAGGCTGACCAACGTCATGGATCTT-GATGAATTAA    643
                     ||.|.||| ||.|.|| ||||||.||.||.||||| ||| |||||..|.|
RBAM_027390__    596 TTTTGGAAGGAAATCA-GCTGACGAATGTGATGGA-CTTGGATGATATGA    643

BSNT_04436___    644 AAGAAGAATACATCAAAATACAAATGGCCTTCGATACAGATGTCAATTTG    693
                     |.|||||.|||||.|||||.||||||||.||.||...|.|.|||...|||
RBAM_027390__    644 AGGAAGAGTACATGAAAATCCAAATGGCATTTGAAGAAAACGTCGCCTTG    693

BSNT_04436___    694 GCCATCAGAGAGCAAAACATTCCGATGCTCGATCAGGCCGGCGTGTTTTA    743
                     ...||||||||.||||||||.|||||.|||||.||.|||||.||||||||
RBAM_027390__    694 AAGATCAGAGAACAAAACATACCGATTCTCGACCATGCCGGTGTGTTTTA    743

BSNT_04436___    744 CACAGTGCTGATTCCGAAAAG--CGATGAGGAGAAAAAGAGCTTTTTGAG    791
                     .||.||||||||||  |||||  ||||||..|||||||||.||||.||..
RBAM_027390__    744 TACGGTGCTGATTC--AAAAGAACGATGAAAAGAAAAAGAACTTTCTGCA    791

BSNT_04436___    792 AGAGCTGAAGCCAAAAGTATGGAATGAGCTTCCTGTCAACCTGGAAGAAG    841
                     |||||||.||||.|||||||||||.|||||||||||.|||.|.|||||||
RBAM_027390__    792 AGAGCTGCAGCCGAAAGTATGGAACGAGCTTCCTGTGAACTTAGAAGAAG    841

BSNT_04436___    842 TGTTCATTGCGAAGTTTGGAGGGAAGCGGAGATGGTAG    879
                     |.|||||.|||||||||||||||||.||||||||||||
RBAM_027390__    842 TCTTCATCGCGAAGTTTGGAGGGAACCGGAGATGGTAG    879


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