Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04436 and RBAM_027390
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:55
# Commandline: needle
# -asequence dna-align/BSNT_04436___ytrB.1.9828.seq
# -bsequence dna-align/RBAM_027390___ytrB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04436___ytrB-RBAM_027390___ytrB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04436___ytrB-RBAM_027390___ytrB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04436___ytrB
# 2: RBAM_027390___ytrB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 888
# Identity: 693/888 (78.0%)
# Similarity: 693/888 (78.0%)
# Gaps: 18/888 ( 2.0%)
# Score: 2653.0
#
#
#=======================================
BSNT_04436___ 1 ATGATTGAACTGCGGCAGCTGTCAAAAGCGATTGACGGCAATCAAGTATT 50
|||||||||.|||||.|.||.||||||.||||.|||||.||..||||..|
RBAM_027390__ 1 ATGATTGAATTGCGGAATCTCTCAAAAACGATAGACGGTAAAGAAGTGCT 50
BSNT_04436___ 51 AAAAGATGTTTCATTAACAATCGAAAAAGGAGAAATCTTTGGATTGCTTG 100
.||.|||.||||..|.||.||||.||||||.|||||.||.||..||||.|
RBAM_027390__ 51 CAAGGATATTTCGCTCACCATCGGAAAAGGGGAAATTTTCGGGCTGCTCG 100
BSNT_04436___ 101 GACGCAACGGATCGGGCAAAACGACGATGCTTCGCTTAATCCAGCAAATC 150
|.||.||||||||.||.|||||.||..||||.||..|.||.|||||.|
RBAM_027390__ 101 GGCGAAACGGATCAGGGAAAACAACACTGCTCCGGCTCATTCAGCAGA-- 148
BSNT_04436___ 151 ATTTTTGCTGACAG----CGGAACGATTTTATTTGA-CGGCGTAGAAATC 195
||.|||||.|.| .||.|||.||||||||.| |.| ||.|||||.
RBAM_027390__ 149 --TTCTGCTGCCGGATCAAGGGACGGTTTTATTTAATCAG-GTGGAAATA 195
BSNT_04436___ 196 AAAAAGCACCCGAAGGTCAAACAAAATATCATCTACATGCCTGTTCAAAA 245
||...|||.|||||.||.|||||.||.|||||.||.|||||||||.||||
RBAM_027390__ 196 AAGCGGCATCCGAAAGTAAAACAGAACATCATTTATATGCCTGTTGAAAA 245
BSNT_04436___ 246 TCCTTTTTACGACAAGTATACATACAAGCAGCTTGTTGATATCCTGAGAA 295
|||||||||.||||||||||||||.||.||||||||||..||..|.||.|
RBAM_027390__ 246 TCCTTTTTATGACAAGTATACATATAAACAGCTTGTTGCGATTGTAAGCA 295
BSNT_04436___ 296 GAATATATCCGAAATTTGATGTCACGTACGCGAATGAACTGATGAACAGA 345
||||.||||||||.||||||||.||.|||||.|||||.|||||||||||.
RBAM_027390__ 296 GAATCTATCCGAATTTTGATGTGACTTACGCCAATGAGCTGATGAACAGG 345
BSNT_04436___ 346 TACGAAATTCCAGAAACGAAAAAATACCGTGAGCTGTCGACAGGCTTGAA 395
||||..|||||.||||||||.|||||||||||..|.|||||||||.||||
RBAM_027390__ 346 TACGGCATTCCGGAAACGAAGAAATACCGTGAATTATCGACAGGCCTGAA 395
BSNT_04436___ 396 AAAACAGCTGTCGCTCGTTCTGTCGTTTGCGGCGAGACCGGCGCTGATCC 445
|||||||||..|||||||.||..|.|||||..|..|.|||||.||.||||
RBAM_027390__ 396 AAAACAGCTTGCGCTCGTCCTTGCCTTTGCTTCACGCCCGGCTCTTATCC 445
BSNT_04436___ 446 TCCTTGATGAGCCGACGGATGGTATTGATGCGGTAACTAGACATGATGTG 495
|..|.|||||.||||||||.||.|||||.||.|||||..|.|||||.|||
RBAM_027390__ 446 TTTTGGATGAACCGACGGACGGAATTGACGCCGTAACGCGTCATGACGTG 495
BSNT_04436___ 496 CTGCAGCTGATGGTCGATGAAGTGGCAGAGCGTGATACGAGTATCCTGAT 545
||||||||.|||||.|||||||||||.||.||.||.|||||.||.|||||
RBAM_027390__ 496 CTGCAGCTTATGGTGGATGAAGTGGCTGAACGGGAAACGAGCATTCTGAT 545
BSNT_04436___ 546 TACGTCTCACCGGCTTGAAGACATAGAGCGGATGTGCAACCGAATTGGCT 595
|||.||.|||||..|.|||||.||.|||||.|||||||||||.||.||.|
RBAM_027390__ 546 TACCTCACACCGTTTAGAAGATATTGAGCGAATGTGCAACCGGATCGGGT 595
BSNT_04436___ 596 TTCTTGAA-GATAACAGGCTGACCAACGTCATGGATCTT-GATGAATTAA 643
||.|.||| ||.|.|| ||||||.||.||.||||| ||| |||||..|.|
RBAM_027390__ 596 TTTTGGAAGGAAATCA-GCTGACGAATGTGATGGA-CTTGGATGATATGA 643
BSNT_04436___ 644 AAGAAGAATACATCAAAATACAAATGGCCTTCGATACAGATGTCAATTTG 693
|.|||||.|||||.|||||.||||||||.||.||...|.|.|||...|||
RBAM_027390__ 644 AGGAAGAGTACATGAAAATCCAAATGGCATTTGAAGAAAACGTCGCCTTG 693
BSNT_04436___ 694 GCCATCAGAGAGCAAAACATTCCGATGCTCGATCAGGCCGGCGTGTTTTA 743
...||||||||.||||||||.|||||.|||||.||.|||||.||||||||
RBAM_027390__ 694 AAGATCAGAGAACAAAACATACCGATTCTCGACCATGCCGGTGTGTTTTA 743
BSNT_04436___ 744 CACAGTGCTGATTCCGAAAAG--CGATGAGGAGAAAAAGAGCTTTTTGAG 791
.||.|||||||||| ||||| ||||||..|||||||||.||||.||..
RBAM_027390__ 744 TACGGTGCTGATTC--AAAAGAACGATGAAAAGAAAAAGAACTTTCTGCA 791
BSNT_04436___ 792 AGAGCTGAAGCCAAAAGTATGGAATGAGCTTCCTGTCAACCTGGAAGAAG 841
|||||||.||||.|||||||||||.|||||||||||.|||.|.|||||||
RBAM_027390__ 792 AGAGCTGCAGCCGAAAGTATGGAACGAGCTTCCTGTGAACTTAGAAGAAG 841
BSNT_04436___ 842 TGTTCATTGCGAAGTTTGGAGGGAAGCGGAGATGGTAG 879
|.|||||.|||||||||||||||||.||||||||||||
RBAM_027390__ 842 TCTTCATCGCGAAGTTTGGAGGGAACCGGAGATGGTAG 879
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