Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_04432 and RBAM_027350
See
DNA alignment /
Visit
BSNT_04432 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:54
# Commandline: needle
# -asequence pep-align/BSNT_04432___ytrE.1.9828.seq
# -bsequence pep-align/RBAM_027350___ytrE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_04432___ytrE-RBAM_027350___ytrE.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04432___ytrE-RBAM_027350___ytrE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04432___ytrE
# 2: RBAM_027350___ytrE
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 233
# Identity: 212/233 (91.0%)
# Similarity: 221/233 (94.8%)
# Gaps: 2/233 ( 0.9%)
# Score: 1085.0
#
#
#=======================================
BSNT_04432___ 1 --MIDVQHIDHSFTIGKKGRENEVPVLKDVSLRVAKGEIACIVGRSGSGK 48
:|:||||||||.||:||||:||||||||||.|.|||||||||||||||
RBAM_027350__ 1 MYVIEVQHIDHSFKIGRKGRESEVPVLKDVSLTVEKGEIACIVGRSGSGK 50
BSNT_04432___ 49 STLLNLISGYISPTKGRIVINGTDVTGFNEKEWAQFRLDHFGFIFQSFQL 98
|||||||||||:||||||||||||||||:|||||||||.|||||||||||
RBAM_027350__ 51 STLLNLISGYIAPTKGRIVINGTDVTGFSEKEWAQFRLGHFGFIFQSFQL 100
BSNT_04432___ 99 IPGLTTYENVEMPLALKGIKPSERKQKVQDMLKRVGLENHAAHYPNELSG 148
||.|||||||||||||||:|||||||||.||||||||||||.||||||||
RBAM_027350__ 101 IPSLTTYENVEMPLALKGVKPSERKQKVADMLKRVGLENHANHYPNELSG 150
BSNT_04432___ 149 GQQQRVSIARALILNPSIILADEPTGSLDSETEHEVLELIQQLNRERGIT 198
|||||||||||||||||||||||||||||||||.|||.||||||||||||
RBAM_027350__ 151 GQQQRVSIARALILNPSIILADEPTGSLDSETELEVLALIQQLNRERGIT 200
BSNT_04432___ 199 FVIITHDDEVASIGHSKFQLHDGVLKGGITVEV 231
|||||||||||||.||||||||||||||:|||:
RBAM_027350__ 201 FVIITHDDEVASIAHSKFQLHDGVLKGGVTVEI 233
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.