Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04432 and RBAM_027350
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:54
# Commandline: needle
# -asequence dna-align/BSNT_04432___ytrE.1.9828.seq
# -bsequence dna-align/RBAM_027350___ytrE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04432___ytrE-RBAM_027350___ytrE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04432___ytrE-RBAM_027350___ytrE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04432___ytrE
# 2: RBAM_027350___ytrE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 704
# Identity: 570/704 (81.0%)
# Similarity: 570/704 (81.0%)
# Gaps: 10/704 ( 1.4%)
# Score: 2314.0
#
#
#=======================================
BSNT_04432___ 1 ------ATGATTGATGTTCAGCATATCGACCATTCTTTCACGATCGGAAA 44
.||||.||.||.||||||||.||.|||||.||.|..|||||.|.
RBAM_027350__ 1 GTGTACGTGATAGAAGTACAGCATATTGATCATTCATTTAAAATCGGCAG 50
BSNT_04432___ 45 AAAGGGCCGTGAGAATGAAGTTCCAGTATTGAAGGATGTTTCATT-ACGT 93
.||.|||.|.||||.|||.|||||.||||||||||||||.||.|| || .
RBAM_027350__ 51 GAAAGGCAGAGAGAGTGAGGTTCCGGTATTGAAGGATGTCTCTTTGAC-C 99
BSNT_04432___ 94 GTGGCGAAAGGTGAGATCGCCTGTATTGTCGGGCGAAGCGGCTCAGGGAA 143
||.|..|||||.||.||.||||||||.|||||.||.|||||.||.||.||
RBAM_027350__ 100 GTTGAAAAAGGGGAAATTGCCTGTATCGTCGGTCGGAGCGGTTCCGGAAA 149
BSNT_04432___ 144 ATCAACGCTTTTGAATTTGATTTCCGGCTACATATCGCCGACAAAAGGGC 193
||||||||||.|||||||.||.|||||.||||||.|||||||.||.||.|
RBAM_027350__ 150 ATCAACGCTTCTGAATTTAATATCCGGATACATAGCGCCGACGAAGGGCC 199
BSNT_04432___ 194 GGATTGTCATTAATGGCACTGATGTTACGGGGTTTAATGAAAAGGAATGG 243
|.||.||||||||.|||||||||||.|||||.||.|.||||||.||.|||
RBAM_027350__ 200 GTATCGTCATTAACGGCACTGATGTGACGGGCTTCAGTGAAAAAGAGTGG 249
BSNT_04432___ 244 GCGCAATTTCGGCTTGACCATTTTGGTTTTATTTTCCAAAGTTTTCAGCT 293
|||||.||.||.||.|..|||||.||.||||||||.||||||||||||||
RBAM_027350__ 250 GCGCAGTTCCGCCTCGGGCATTTCGGCTTTATTTTTCAAAGTTTTCAGCT 299
BSNT_04432___ 294 CATCCCGGGTTTAACGACGTATGAGAATGTTGAAATGCCGCTGGCGTTAA 343
|||.|||.||.|.||.||.|||||.|||||||||||||||||.||.||||
RBAM_027350__ 300 CATTCCGAGTCTGACAACCTATGAAAATGTTGAAATGCCGCTTGCCTTAA 349
BSNT_04432___ 344 AAGGGATCAAGCCCTCTGAGCGGAAGCA-AAAGGTGCAGGACATGCTGAA 392
||||..||||.||.|||||.||.||||| ||||..|| ||||||||||||
RBAM_027350__ 350 AAGGCGTCAAACCGTCTGAACGCAAGCAGAAAGTCGC-GGACATGCTGAA 398
BSNT_04432___ 393 ACGCGTCGGTCTGGAAAACCACGCCGCTCATTATCCGAATGAACTGTCAG 442
|||.|||||.||.||.||.||.||...|||||||||||||||.|||||||
RBAM_027350__ 399 ACGGGTCGGACTTGAGAATCATGCGAATCATTATCCGAATGAGCTGTCAG 448
BSNT_04432___ 443 GCGGCCAGCAGCAGCGTGTCAGTATTGCTCGAGCATTGATTTTAAATCCT 492
|||||||||||||||||||.|||||.||..||||..|||||||||||||.
RBAM_027350__ 449 GCGGCCAGCAGCAGCGTGTTAGTATCGCAAGAGCCCTGATTTTAAATCCG 498
BSNT_04432___ 493 TCGATTATCTTAGCGGATGAGCCGACGGGAAGCCTTGATTCAGAAACGGA 542
||||||||.|||||.|||||||||||||||||||||||||||||||||||
RBAM_027350__ 499 TCGATTATTTTAGCTGATGAGCCGACGGGAAGCCTTGATTCAGAAACGGA 548
BSNT_04432___ 543 ACATGAAGTGCTGGAATTGATCCAGCAGCTGAATCGTGAGCGTGGCATTA 592
||.|||.|||||.|..||.||.|||||||||||.||.|||||.||.||||
RBAM_027350__ 549 ACTTGAGGTGCTTGCGTTAATTCAGCAGCTGAACCGGGAGCGCGGGATTA 598
BSNT_04432___ 593 CATTTGTGATCATTACTCACGATGATGAAGTCGCTTCTATCGGACATTCA 642
|||||||.||||||||.||.||.||||||||||||||.||||..||||||
RBAM_027350__ 599 CATTTGTCATCATTACGCATGACGATGAAGTCGCTTCGATCGCGCATTCA 648
BSNT_04432___ 643 AAATTTCAGCTTCATGATGGTGTGCTAAAAGGAGGAATTACCGTTGAGGT 692
|||||.|||||.|||||.|||||..|||||||.||..||||.||||||.|
RBAM_027350__ 649 AAATTCCAGCTGCATGACGGTGTATTAAAAGGGGGCGTTACTGTTGAGAT 698
BSNT_04432___ 693 TTAA 696
||||
RBAM_027350__ 699 TTAA 702
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