Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_04418 and RBAM_027260

See DNA alignment / Visit BSNT_04418 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:53
# Commandline: needle
#    -asequence pep-align/BSNT_04418___ytvB.1.9828.seq
#    -bsequence pep-align/RBAM_027260___ytvB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04418___ytvB-RBAM_027260___ytvB.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04418___ytvB-RBAM_027260___ytvB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04418___ytvB
# 2: RBAM_027260___ytvB
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 111
# Identity:      81/111 (73.0%)
# Similarity:    85/111 (76.6%)
# Gaps:          18/111 (16.2%)
# Score: 387.5
# 
#
#=======================================

BSNT_04418___      1 --------------MGILGHVKKRGRLEKPRMTKRFIYLGFLEDWFIGMT     36
                                   ||:|||||||||||||||||||||||||||.||||.
RBAM_027260__      1 MLHQVIIACVIGGIMGVLGHVKKRGRLEKPRMTKRFIYLGFLEDGFIGMA     50

BSNT_04418___     37 ASILLVLSADPDSGIQLVILSIISGYGGEAVLRSFDFVRELNSGGEPAES     86
                     |||||||||||||||||||||||:||||||||||||||||.||  :.||:
RBAM_027260__     51 ASILLVLSADPDSGIQLVILSIIAGYGGEAVLRSFDFVREQNS--DSAEA     98

BSNT_04418___     87 K-RQTKTPPE-     95
                     | .|.|.||. 
RBAM_027260__     99 KPHQQKNPPSK    109


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