Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04418 and RBAM_027260

See Amino acid alignment / Visit BSNT_04418 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:53
# Commandline: needle
#    -asequence dna-align/BSNT_04418___ytvB.1.9828.seq
#    -bsequence dna-align/RBAM_027260___ytvB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04418___ytvB-RBAM_027260___ytvB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04418___ytvB-RBAM_027260___ytvB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04418___ytvB
# 2: RBAM_027260___ytvB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 338
# Identity:     246/338 (72.8%)
# Similarity:   246/338 (72.8%)
# Gaps:          58/338 (17.2%)
# Score: 1048.0
# 
#
#=======================================

BSNT_04418___      1 ------------------------------------------ATGGGGAT      8
                                                               ||||||.|
RBAM_027260__      1 ATGCTGCATCAGGTAATAATTGCTTGTGTAATTGGAGGAATCATGGGGGT     50

BSNT_04418___      9 TCTCGGTCATGTGAAAAAGAGAGGCAGGCTGGAGAAGCCCAGAATGACGA     58
                     ||||||||||||||||||||||||||||||||||||.||.||||||||.|
RBAM_027260__     51 TCTCGGTCATGTGAAAAAGAGAGGCAGGCTGGAGAAACCTAGAATGACAA    100

BSNT_04418___     59 AGCGGTTTATCTACCTTGGATTTTTGGAAGATTGGTTTATCGGCATGACG    108
                     |||||||||||||.||.||.||||||||||||.|.||||||||.|||.|.
RBAM_027260__    101 AGCGGTTTATCTATCTCGGTTTTTTGGAAGATGGTTTTATCGGAATGGCT    150

BSNT_04418___    109 GCTTCCATTTTACTTGTATTATCCGCTGACCCCGATTCAGGAATTCAACT    158
                     ||||||||.||||||||.||||||||||||||||||||||||||||||||
RBAM_027260__    151 GCTTCCATCTTACTTGTCTTATCCGCTGACCCCGATTCAGGAATTCAACT    200

BSNT_04418___    159 TGTCATCTTATCCATTATCTCAGGCTACGGCGGTGAAGCTGTTCTCAGAA    208
                     .||||||||||||||.|||.|||||||||||||.||||||||||||||.|
RBAM_027260__    201 CGTCATCTTATCCATAATCGCAGGCTACGGCGGAGAAGCTGTTCTCAGGA    250

BSNT_04418___    209 GTTTTGACTTTGTGAGAGAACTGAACAGCGGCGGCGAACCGGCCGAGTCC    258
                     |.|||||.|||||.|||||||..||||      |.||..|||||||..|.
RBAM_027260__    251 GCTTTGATTTTGTCAGAGAACAAAACA------GTGATTCGGCCGAAGCA    294

BSNT_04418___    259 AAACGTCAAACC------AAAA--CTCCACCCGAATAA    288
                     ||||  ||.|||      ||||  |||||.|..|||||
RBAM_027260__    295 AAAC--CACACCAGCAAAAAAATCCTCCATCAAAATAA    330


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