Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_04364 and RBAM_027040

See DNA alignment / Visit BSNT_04364 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:49
# Commandline: needle
#    -asequence pep-align/BSNT_04364___ytlR.1.9828.seq
#    -bsequence pep-align/RBAM_027040___ytlR.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04364___ytlR-RBAM_027040___ytlR.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04364___ytlR-RBAM_027040___ytlR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04364___ytlR
# 2: RBAM_027040___ytlR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 309
# Identity:     198/309 (64.1%)
# Similarity:   234/309 (75.7%)
# Gaps:           0/309 ( 0.0%)
# Score: 1076.0
# 
#
#=======================================

BSNT_04364___      1 MSHWFFIINPTAGHRNGLRVWKSIQKELIKRKVEHRSFLTEHPGHAEVLA     50
                     ||.|||||||.:|...|.|||||:||||.:|.|.||||||.|||||||||
RBAM_027040__      1 MSQWFFIINPVSGGGRGRRVWKSVQKELNRRGVSHRSFLTGHPGHAEVLA     50

BSNT_04364___     51 RQISTIQEYKLKRLIVIGGDGTMHEVVNGLKDVDDIELSFVPAGAYNDFS    100
                     ||||.:|::|||||.|||||||||||:||||..|.|||:|||||:|||||
RBAM_027040__     51 RQISMMQDHKLKRLFVIGGDGTMHEVINGLKGTDQIELTFVPAGSYNDFS    100

BSNT_04364___    101 RGFSIKKIDLIQEIKKVKRPLTRTFHLGSVNFLQDKSQILYFMNHIGIGF    150
                     :|..|||..|:||||.:.|||||.|..||:||..||:|.|||:||:.:||
RBAM_027040__    101 KGLGIKKSALLQEIKSLHRPLTRKFFAGSINFFHDKAQSLYFINHLSVGF    150

BSNT_04364___    151 DAYVNKKAMEFPLRRVFLFLRLRFLVYPLSHLHASATFKPFTLACTTEDE    200
                     ||.|.|.|..|||.||..||||.|::|||:|||.::.|:||...||.:.:
RBAM_027040__    151 DASVLKAAANFPLSRVLRFLRLGFVIYPLAHLHKASRFQPFRFVCTADGQ    200

BSNT_04364___    201 TREFHDVWFAVVSNHPFYGGGMKAAPLANPREKTFDIVIVENQPFLKKYW    250
                     .|||.:|||.:.:|||:||||||.||.||||:..|||||.||..|...|.
RBAM_027040__    201 RREFRNVWFVIAANHPYYGGGMKGAPSANPRQNHFDIVIAENLSFFSLYR    250

BSNT_04364___    251 LLCLMAFGKHTKMDGVTMFKAKDITFYTKDKIPFHADGEFMGTTPFRLAS    300
                     .|..|:||:|.|||||||.|.|:..|.|..|||||||||.:|||||||..
RBAM_027040__    251 FLWAMSFGRHIKMDGVTMIKGKEFVFETDGKIPFHADGELIGTTPFRLMP    300

BSNT_04364___    301 SPSPLRIKT    309
                     ..:||:|||
RBAM_027040__    301 GGTPLKIKT    309


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