Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04364 and RBAM_027040
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:49
# Commandline: needle
# -asequence dna-align/BSNT_04364___ytlR.1.9828.seq
# -bsequence dna-align/RBAM_027040___ytlR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04364___ytlR-RBAM_027040___ytlR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04364___ytlR-RBAM_027040___ytlR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04364___ytlR
# 2: RBAM_027040___ytlR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 981
# Identity: 663/981 (67.6%)
# Similarity: 663/981 (67.6%)
# Gaps: 102/981 (10.4%)
# Score: 1991.5
#
#
#=======================================
BSNT_04364___ 1 ATGAGCCATTGGTTTTTTATTATTAATCCG---ACAGCAGGACATCGAAA 47
|||||.||.||||||||||||||||||||| .|||.|||....||
RBAM_027040__ 1 ATGAGTCAATGGTTTTTTATTATTAATCCGGTCTCAGGAGGCGGGCG--- 47
BSNT_04364___ 48 CGGCCTGCGTGTTTGGAAGTCCATTCAAAAAGAATTGATCAAACGAAAGG 97
.||||.||||||.|||||.||..||||||||||..|||.||..|| ..||
RBAM_027040__ 48 GGGCCGGCGTGTCTGGAAATCAGTTCAAAAAGAGCTGAACAGGCG-CGGG 96
BSNT_04364___ 98 TTGAG-CACCGTTCATTTTTAACTGAACATCCGGGACACGCCGAGGTGCT 146
.|.|| |||||.||.|||||.||.|..|||||.|||||.||.||||||||
RBAM_027040__ 97 GTCAGCCACCGCTCTTTTTTGACCGGGCATCCCGGACATGCGGAGGTGCT 146
BSNT_04364___ 147 CGCCAGACAGATTTCAACGATACAGGAATATAAGCTGAAGCGCCTGATCG 196
.||.||.||||||||||.|||.|||||..|||||||.|||||.|||.|||
RBAM_027040__ 147 GGCGAGGCAGATTTCAATGATGCAGGATCATAAGCTTAAGCGGCTGTTCG 196
BSNT_04364___ 197 TCATTGGCGGAGACGGAACCATGCATGAAGTTGTCAACGGGCTGAAAG-- 244
||||.|||||.|||||.||.|||||||||||..|.|||||.|||||||
RBAM_027040__ 197 TCATCGGCGGTGACGGGACGATGCATGAAGTCATTAACGGACTGAAAGGA 246
BSNT_04364___ 245 ATGTTGACGATATTGAGCTGAGCTTTGTGCCGGCGGGCGCATATAATGAT 294
|.| ||..|.||||||||||.|||||||||.||.||..|.||.|||||.
RBAM_027040__ 247 ACG--GATCAGATTGAGCTGACCTTTGTGCCCGCCGGTTCGTACAATGAC 294
BSNT_04364___ 295 TTTTCGCGAGGATTCTCTATTAAAAAAATC-GATCTGATACAGGAAATCA 343
|||||...|||..||..|||| ||.||.|| |..||..|.||.|||||||
RBAM_027040__ 295 TTTTCCAAAGGGCTCGGTATT-AAGAAGTCGGCGCTTCTCCAAGAAATCA 343
BSNT_04364___ 344 AGAAG-GTAAAGCGCCCGTTAACAAGAACCTTTCATTT--AGGGAGCGTC 390
| ||| .|..|.||||||.|.|||.|.|..||| ||| .||.|||.||
RBAM_027040__ 344 A-AAGTCTGCACCGCCCGCTCACACGGAAATTT--TTTGCGGGAAGCATC 390
BSNT_04364___ 391 AATTTCCTTCAGGATAAATCACAGAT-TCTTTATTTTATGAATCA--TAT 437
||.||..||||.||.|||.|.|| || .|||||||||||.||.|| |.|
RBAM_027040__ 391 AACTTTTTTCATGACAAAGCGCA-ATCACTTTATTTTATTAACCACCTGT 439
BSNT_04364___ 438 CGGGATCGGGTTTGACGCATATGTCAATAAAAAG------GCGATGGAAT 481
|.| ||||.||.||.||.|..|| |...||| |||| |.|
RBAM_027040__ 440 CTG--TCGGCTTCGATGCCTCAGT---TTTGAAGGCAGCCGCGA---ATT 481
BSNT_04364___ 482 TTCCGTTGAGACGGGTTTTTC---TTTT---TCTCCGCCTT-CGATTTCT 524
|||||||....||.|||.||| |||| ||||.||.|| .||||
RBAM_027040__ 482 TTCCGTTATCGCGCGTTCTTCGGTTTTTGCGTCTCGGCTTTGTGATT--- 528
BSNT_04364___ 525 TGTGTATCCGCTTTCTCATTTGC---ACGCTTCGGCAACCTTTAAGCCGT 571
||.|||||..|.|||||.| |.||.||| |..|||.||||||
RBAM_027040__ 529 ----TACCCGCTCGCGCATTTACATAAGGCCTCG---AGGTTTCAGCCGT 571
BSNT_04364___ 572 TTACGTTAGCTTGTACGACGGAAGACG---AGACGCGCGAATTTCATGAT 618
|.|..||.| |||.| ||||.||||| |||.|||.|||||.|...||
RBAM_027040__ 572 TCAGATTTG--TGTGC-ACGGCAGACGGCCAGAGGCGTGAATTCCGCAAT 618
BSNT_04364___ 619 GTCTGGTTTGCGGTTGTATCCAACCATCCGTTTTACGGGGGAGGCATGAA 668
||||||||||...|||...|.||.||.||.|.||||||.||.||||||||
RBAM_027040__ 619 GTCTGGTTTGTCATTGCGGCTAATCACCCTTATTACGGAGGCGGCATGAA 668
BSNT_04364___ 669 GGCGGCGCCCCTAGCAAATCCGCGCGAGAAGACA-TTTGATATCGTAATC 717
.|.||||||...|||||||||.||..| ||..|| ||||||||.||.|||
RBAM_027040__ 669 AGGGGCGCCTTCAGCAAATCCCCGTCA-AAACCATTTTGATATTGTCATC 717
BSNT_04364___ 718 GTTGAAAACCAGCCGTTTT------TGAAAAAATATTGGCTTTTATGTCT 761
|..|||||||.|.|.|||| || |||.|..|||||||...
RBAM_027040__ 718 GCAGAAAACCTGTCCTTTTTCTCGCTG------TATCGTTTTTTATGGGC 761
BSNT_04364___ 762 CATG-GCATTTGGAAAACATA-CAAAGATGGATGGCGTTACGATGTTTAA 809
.||| || ||.||....|||| |||| |||||.||.||.||||||.|.||
RBAM_027040__ 762 GATGAGC-TTCGGCCGTCATATCAAA-ATGGACGGAGTGACGATGATAAA 809
BSNT_04364___ 810 AGCGAAGGACATTACATTTT----ACACGAAGGACAAAATCCCGTTCCAT 855
.|.|||||| ||| |.|||| ||| ||.|| .|||||.|||||.||.
RBAM_027040__ 810 GGGGAAGGA-ATT-CGTTTTTGAAACA-GATGG-GAAAATTCCGTTTCAC 855
BSNT_04364___ 856 GCTGACGGAGAATTCATGGGCACTACCCCGTTTCGTCTGGCATCTAGTCC 905
||||||||.||..|.||.||.||.||.||||||||.|| ||..||
RBAM_027040__ 856 GCTGACGGCGAGCTGATCGGAACGACGCCGTTTCGGCT------TATGCC 899
BSNT_04364___ 906 ------TTCACCCCTAAGAATCAAAACATAA 930
|.|.||..|.|.|||.|||||||||
RBAM_027040__ 900 GGGCGGTACGCCGTTGAAAATAAAAACATAA 930
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