Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_04304 and RBAM_026480

See DNA alignment / Visit BSNT_04304 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:45
# Commandline: needle
#    -asequence pep-align/BSNT_04304___ytcJ.1.9828.seq
#    -bsequence pep-align/RBAM_026480___ytcJ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04304___ytcJ-RBAM_026480___ytcJ.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04304___ytcJ-RBAM_026480___ytcJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04304___ytcJ
# 2: RBAM_026480___ytcJ
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 532
# Identity:     394/532 (74.1%)
# Similarity:   450/532 (84.6%)
# Gaps:           4/532 ( 0.8%)
# Score: 2117.0
# 
#
#=======================================

BSNT_04304___      1 MKAIWHGGFIYTMLEEGDRTEAVYVEDGVIKGTGSYERLKEKYGSPETEE     50
                     ||||||||.|||||::...|||:|.|:||::.|||:..|:..||||:|||
RBAM_026480__      1 MKAIWHGGTIYTMLDKNHVTEAIYTEEGVVRQTGSFRELQGTYGSPDTEE     50

BSNT_04304___     51 ISLNGAVMFPGFVDSHLHLIGHGEKQLQLDLSALTSKDAILQAAKERERQ    100
                     |.|:||||||||.|||:||||||||||:||||.||||:|||:||||.||:
RBAM_026480__     51 IDLHGAVMFPGFTDSHMHLIGHGEKQLRLDLSQLTSKEAILRAAKEAERE    100

BSNT_04304___    101 LPKNDWLIGEGWNENQFETPDYLTKHDLDRLFPDRPVLLKRICRHAIAVN    150
                     |...:|||||||:||.||.|||:||||||.|||||||||||:||||.|||
RBAM_026480__    101 LEDGEWLIGEGWDENLFEQPDYVTKHDLDPLFPDRPVLLKRVCRHAAAVN    150

BSNT_04304___    151 SAALQAAGISRNTPDPDGGVIVKDANGEPSGLLFDKAQDLILKAVPPVSQ    200
                     ||||:||||:..||||:||:||:|..| |:|||.||||:|:.:|:||||.
RBAM_026480__    151 SAALRAAGITNETPDPNGGIIVRDGTG-PTGLLLDKAQELVTQALPPVSL    199

BSNT_04304___    201 HYVDEALTAAIKDCWTKGLTGGHSEDLSYYGDVSVPMKAYEKAVAGGKYP    250
                     |||..||..||.|||:|||||||||||:||||.|||:.|||.....|.||
RBAM_026480__    200 HYVKRALQTAITDCWSKGLTGGHSEDLAYYGDASVPVAAYESLTGSGLYP    249

BSNT_04304___    251 FRCHLLVHHEAVDRWEQLDKPSGPYVEFGAMKIFADGALGGRTALLKEPY    300
                     ||.||||||||||.|..|||.:|||:|:|||||||||||||||||||:||
RBAM_026480__    250 FRAHLLVHHEAVDSWSALDKSTGPYLEYGAMKIFADGALGGRTALLKKPY    299

BSNT_04304___    301 QDDPSTNGVQVHDDETLGRLIRKAREKGMEVAVHAIGDLAFEKVLNAIEK    350
                     .||||.:||||||||||..|:.||||||||:||||||||||||||:.||:
RBAM_026480__    300 HDDPSVSGVQVHDDETLAALVYKAREKGMEIAVHAIGDLAFEKVLDVIER    349

BSNT_04304___    351 HPPKNGRHDRLIHAQVLDNELIERAARMPIALDLQPHFVASDFPWVIDRL    400
                     :|.|.|:.||||||||||:.|||||||:||.|||||||||||||||||||
RBAM_026480__    350 YPAKPGQLDRLIHAQVLDDGLIERAARLPIGLDLQPHFVASDFPWVIDRL    399

BSNT_04304___    401 GKDRMKTAFAWKTLISKGILCAGGSDAPIEPVDPLLGIQSAVLRKSSHEQ    450
                     |::|||||||||||:|||:||||||||||||.||||||||||||.|....
RBAM_026480__    400 GEERMKTAFAWKTLLSKGLLCAGGSDAPIEPADPLLGIQSAVLRTSKQHP    449

BSNT_04304___    451 NGPSYNESECLPVYEAIKLYTEGSAGIIYKEKSRGKIAEGYDADFTVLSG    500
                     .||:|.|.|||.|||||:|||||||.||:||.|||:||.|||||||||||
RBAM_026480__    450 EGPAYYEKECLTVYEAIQLYTEGSAAIIHKEHSRGRIAPGYDADFTVLSG    499

BSNT_04304___    501 DPFAIDPAQLHLLEIKKTVINGQIVYEKS---    529
                     |||..||.:||.||..|||:.|:|||||.   
RBAM_026480__    500 DPFRTDPKKLHELEAVKTVVGGRIVYEKEDRQ    531


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